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comparison SplitOnRg.xml @ 0:afa51021226c draft

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author geert-vandeweyer
date Tue, 18 Feb 2014 04:18:08 -0500
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children 76aff7bca1b2
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1 <tool id="bamtools_SplitOnRG" name="Split BAM on ReadGroups" force_history_refresh="True">
2 <description/>
3 <requirements>
4 <requirement type="package" version="2.3.0">bamtools</requirement>
5 </requirements>
6 <command interpreter="perl">
7 SplitOnRG.pl -i '$input1' -o $output1 -O $output1.id -k $dbkey -p $__new_file_path__
8 </command>
9 <inputs>
10 <param format="bam" name="input1" type="data" label="BAM file"/>
11 </inputs>
12 <outputs>
13 <data format="txt" name="output1" metadata_source="input1" />
14 </outputs>
15 <help>
16 **What it does** This tools splits a bam file by RG-ids. ------- *bamtools split* is part of the `BAMTools package` by Derek Barnett. : https://github.com/pezmaster31/bamtools
17 </help>
18 </tool>