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added samtools requirement to splitonrg
author geert-vandeweyer
date Mon, 12 May 2014 02:06:26 -0400
parents 76aff7bca1b2
children
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<tool id="bamtools_SplitOnRG" name="Split BAM on ReadGroups" force_history_refresh="True">
<description/>
<requirements>
	<requirement type="package" version="2.3.0">bamtools</requirement>
        <requirement type="package" version="0.1.18">samtools</requirement>
	
</requirements>
<command interpreter="perl">
SplitOnRg.pl -i '$input1' -o $output1 -O $output1.id -k $dbkey -p $__new_file_path__ 
</command>
<inputs>
<param format="bam" name="input1" type="data" label="BAM file"/>
</inputs>
<outputs>
<data format="txt" name="output1" metadata_source="input1"  />
</outputs>
<help>
**What it does** This tools splits a bam file by RG-ids. ------- *bamtools split* is part of the `BAMTools package` by Derek Barnett. : https://github.com/pezmaster31/bamtools
</help>
</tool>