Mercurial > repos > geert-vandeweyer > bamtools_wrappers
view SplitOnRg.xml @ 0:afa51021226c draft
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author | geert-vandeweyer |
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date | Tue, 18 Feb 2014 04:18:08 -0500 |
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children | 76aff7bca1b2 |
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<tool id="bamtools_SplitOnRG" name="Split BAM on ReadGroups" force_history_refresh="True"> <description/> <requirements> <requirement type="package" version="2.3.0">bamtools</requirement> </requirements> <command interpreter="perl"> SplitOnRG.pl -i '$input1' -o $output1 -O $output1.id -k $dbkey -p $__new_file_path__ </command> <inputs> <param format="bam" name="input1" type="data" label="BAM file"/> </inputs> <outputs> <data format="txt" name="output1" metadata_source="input1" /> </outputs> <help> **What it does** This tools splits a bam file by RG-ids. ------- *bamtools split* is part of the `BAMTools package` by Derek Barnett. : https://github.com/pezmaster31/bamtools </help> </tool>