Mercurial > repos > geert-vandeweyer > bamtools_wrappers

changeset 1:76aff7bca1b2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author geert-vandeweyer
date Tue, 18 Feb 2014 05:06:20 -0500
parents afa51021226c
children 2572b6f85654
files SplitOnRg.xml bamToFastX.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/SplitOnRg.xml	Tue Feb 18 04:18:08 2014 -0500
+++ b/SplitOnRg.xml	Tue Feb 18 05:06:20 2014 -0500
@@ -4,7 +4,7 @@
 	<requirement type="package" version="2.3.0">bamtools</requirement>
 </requirements>
 <command interpreter="perl">
-SplitOnRG.pl -i '$input1' -o $output1 -O $output1.id -k $dbkey -p $__new_file_path__ 
+SplitOnRg.pl -i '$input1' -o $output1 -O $output1.id -k $dbkey -p $__new_file_path__ 
 </command>
 <inputs>
 <param format="bam" name="input1" type="data" label="BAM file"/>
--- a/bamToFastX.xml	Tue Feb 18 04:18:08 2014 -0500
+++ b/bamToFastX.xml	Tue Feb 18 05:06:20 2014 -0500
@@ -14,7 +14,7 @@
 </param>
 </inputs>
 <outputs>
-<data format="fastqsanger" name="output" metadata_source="input1" label="$input1.tag (FASTQ/A)">
+<data format="fastqsanger" name="output" metadata_source="input1" >
 <change_format>
 <when input="format" value="fasta" format="fasta"/>
 </change_format>