Mercurial > repos > geert-vandeweyer > dc_genotyper
comparison dbsnp_indexes.loc.sample @ 0:e8a32d824f39 draft
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| author | geert-vandeweyer |
|---|---|
| date | Thu, 25 Sep 2014 05:24:35 -0400 |
| parents | |
| children | a7e7f9b8f538 |
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| -1:000000000000 | 0:e8a32d824f39 |
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| 1 #This is a sample file distributed with Galaxy that enables the DC_Genotyper | |
| 2 #tool to locate bgzip-compressed and indexed versions of dbSNP. You will | |
| 3 #need to supply these files and then create a dbsnp_indexes.loc file | |
| 4 #similar to this one (store it in this directory) that points to | |
| 5 #the directories in which those files are stored. The dbsnp_indexes.loc | |
| 6 #file has this format (white space characters are TAB characters): | |
| 7 # | |
| 8 #<unique_build_id> <display_name> </path/to/dbSNP.vcf.bgz> | |
| 9 # | |
| 10 #for example: | |
| 11 # | |
| 12 #hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/dbsnp/dbsnp_137.hg19.vcf.bgz | |
| 13 #hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/dbsnp/dbsnp_138.hg19.vcf.bgz | |
| 14 #mm9 Mouse (Mus musculus): mm9 /depot/data2/galaxy/dbsnp/dbsnp_128.mm9.vcf.bgz | |
| 15 # | |
| 16 #then your /depot/data2/galaxy/dbsnp/ directory | |
| 17 #would need to contain the following files: | |
| 18 # | |
| 19 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_137.hg19.vcf.bgz | |
| 20 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_137.hg19.vcf.bgz.tbi | |
| 21 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_138.hg19.vcf.bgz | |
| 22 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_138.hg19.vcf.bgz.tbi | |
| 23 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_128.mm9.vcf.bgz | |
| 24 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_128.mm9.vcf.bgz.tbi |