--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/dbsnp_indexes.loc.sample	Thu Sep 25 05:24:35 2014 -0400
@@ -0,0 +1,24 @@
+#This is a sample file distributed with Galaxy that enables the DC_Genotyper  
+#tool to locate bgzip-compressed and indexed versions of dbSNP. You will
+#need to supply these files and then create a dbsnp_indexes.loc file
+#similar to this one (store it in this directory) that points to
+#the directories in which those files are stored. The dbsnp_indexes.loc
+#file has this format (white space characters are TAB characters):
+#
+#<unique_build_id>	<display_name>		</path/to/dbSNP.vcf.bgz>
+#
+#for example:
+#
+#hg19	Human (Homo sapiens): hg19		/depot/data2/galaxy/dbsnp/dbsnp_137.hg19.vcf.bgz
+#hg19	Human (Homo sapiens): hg19		/depot/data2/galaxy/dbsnp/dbsnp_138.hg19.vcf.bgz
+#mm9	Mouse (Mus musculus): mm9		/depot/data2/galaxy/dbsnp/dbsnp_128.mm9.vcf.bgz
+#
+#then your /depot/data2/galaxy/dbsnp/ directory
+#would need to contain the following files:
+#
+#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 dbsnp_137.hg19.vcf.bgz
+#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 dbsnp_137.hg19.vcf.bgz.tbi
+#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 dbsnp_138.hg19.vcf.bgz
+#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 dbsnp_138.hg19.vcf.bgz.tbi
+#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 dbsnp_128.mm9.vcf.bgz
+#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 dbsnp_128.mm9.vcf.bgz.tbi