Mercurial > repos > geert-vandeweyer > files_to_ftp
changeset 2:837fafa672d2 draft
common uncompressed files are now gzipped upons transfer to the ftp directory to save space.
| author | geert-vandeweyer |
|---|---|
| date | Tue, 07 May 2013 09:02:02 -0400 |
| parents | 47070a3859df |
| children | fe42761670f1 |
| files | DownloadFiles.py |
| diffstat | 1 files changed, 7 insertions(+), 1 deletions(-) [+] |
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--- a/DownloadFiles.py Thu Jan 10 04:09:38 2013 -0500 +++ b/DownloadFiles.py Tue May 07 09:02:02 2013 -0400 @@ -29,7 +29,7 @@ fout.write("<p><ol> ") now = datetime.datetime.now() date=str(now)[:10] - fout.write("<li>%s</li>" %(len(sys.argv))) + #fout.write("<li>%s</li>" %(len(sys.argv))) # compose ftp storage location ftpdir="%s/%s/" %(ftpdirconfig,useremail) if len(folder) == 0: @@ -46,9 +46,15 @@ while filecounter < len(sys.argv): inp = sys.argv[filecounter] name = sys.argv[(filecounter+1)] + name = name.replace(':','_') + name = name.replace(' ','_') + name = name.replace('@','_AT_') ext = sys.argv[(filecounter+2)] # copy files to tmp dir & filenames os.system("cp '%s' '%s/%s.%s'" %(inp, storedir,name,ext)) + ## gzip if fastq/fastqsanger/vcf + if ( ext == "fastq" or ext == "fastqsanger" or ext == "vcf" or ext == "sam" or ext == "txt"): + os.system("gzip -9 '%s/%s.%s'" %(storedir,name,ext)) fout.write("<li>%s.%s</li>" %(name,ext)) filecounter +=3