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comparison VCF_to_VariantDB.xml @ 9:3b27cae9b359 draft

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New Version. VariantDB checks for Genome Build matching using the Galaxy dbkey variable.
author geert-vandeweyer
date Mon, 14 Jul 2014 03:24:28 -0400
parents db44ff975de8
children d5040a542e9d
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8:db44ff975de8 9:3b27cae9b359
1 <tool id="VCF_to_DB_rev" name="VCF to VariantDB" version="0.1.2"> 1 <tool id="VCF_to_DB_rev" name="VCF to VariantDB" version="0.1.3">
2 <description></description> 2 <description></description>
3 <expand macro="requirements" /> 3 <expand macro="requirements" />
4 <macros> 4 <macros>
5 <import>VCF_to_VariantDB_macros.xml</import> 5 <import>VCF_to_VariantDB_macros.xml</import>
6 </macros> 6 </macros>
11 ## input file 11 ## input file
12 -v $input1 12 -v $input1
13 -V $__app__.security.encode_id( '%s' % $input1.id ) 13 -V $__app__.security.encode_id( '%s' % $input1.id )
14 ## user email, for identification in DataBase 14 ## user email, for identification in DataBase
15 -u $__user_email__ 15 -u $__user_email__
16 16 ## source file dbkey ( match against variantdb genome build)
17 -G ${input1.dbkey}
17 ## OUTPUT FILE 18 ## OUTPUT FILE
18 -o $output1 19 -o $output1
19 20
20 ## SAMPLE GENDER 21 ## SAMPLE GENDER
21 #if $samplegender != "undef": 22 #if $samplegender != "undef":