Mercurial > repos > geert-vandeweyer > vcf_to_variantdb

diff VCF_to_VariantDB.xml @ 9:3b27cae9b359 draft

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New Version. VariantDB checks for Genome Build matching using the Galaxy dbkey variable.
author geert-vandeweyer
date Mon, 14 Jul 2014 03:24:28 -0400
parents db44ff975de8
children d5040a542e9d
line wrap: on
line diff
--- a/VCF_to_VariantDB.xml	Tue Jun 10 06:01:18 2014 -0400
+++ b/VCF_to_VariantDB.xml	Mon Jul 14 03:24:28 2014 -0400
@@ -1,4 +1,4 @@
-<tool id="VCF_to_DB_rev" name="VCF to VariantDB" version="0.1.2">
+<tool id="VCF_to_DB_rev" name="VCF to VariantDB" version="0.1.3">
   <description></description>
   <expand macro="requirements" />
   <macros>
@@ -13,7 +13,8 @@
       -V $__app__.security.encode_id( '%s' % $input1.id )
       ## user email, for identification in DataBase
       -u $__user_email__
-      
+      ## source file dbkey ( match against variantdb genome build)
+      -G ${input1.dbkey} 
       ## OUTPUT FILE 
 	-o $output1