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annotate job_conf_braker3.xml @ 2:cf241e076f7b draft

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planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
author genouest
date Tue, 05 Sep 2023 09:40:27 +0000
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cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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1 <!-- Adapt the paths to your install of GeneMark and ProtHint, then run planemo with the job_config_file option -->
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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2 <job_conf>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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3 <plugins>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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4 <plugin id="planemo_runner" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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5 </plugins>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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6 <handlers>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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7 </handlers>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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8 <destinations default="planemo_dest">
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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9 <destination id="planemo_dest" runner="planemo_runner">
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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10 <env id="GENEMARK_PATH">/home/abretaud/softs/etp.for_braker/bin/</env>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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11 <env id="PROTHINT_PATH">/home/abretaud/softs/etp.for_braker/bin/gmes/ProtHint/bin/</env>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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12 </destination>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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13 <destination id="upload_dest" runner="planemo_runner">
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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14 <param id="docker_enabled">false</param>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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15 </destination>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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16 </destinations>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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17 <tools>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
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18 <tool id="upload1" destination="upload_dest" />
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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19 </tools>
cf241e076f7b planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit be0db9109388c0660c9f901f6b7129c0e3e5105c
genouest
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20 </job_conf>