Mercurial > repos > genouest > braker3

comparison braker3.xml @ 10:0be6820e3268 draft default tip

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planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit 43caacb959b2d7b842e71737bd645be7ad155a04
author genouest
date Thu, 17 Jul 2025 10:35:48 +0000
parents bec8f57c9d8e
children
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9:bec8f57c9d8e 10:0be6820e3268
8 </xrefs> 8 </xrefs>
9 <requirements> 9 <requirements>
10 <expand macro="requirements"/> 10 <expand macro="requirements"/>
11 </requirements> 11 </requirements>
12 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
13
14 ## Copy Augustus config dir to work dir, to make sure it's writable when running with containers
15 cp -r "\$AUGUSTUS_CONFIG_PATH/" augustus_dir/ &&
16 export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ &&
17
18
13 braker.pl 19 braker.pl
14 --genome '${genome}' 20 --genome '${genome}'
15 $softmasking 21 $softmasking
16 22
17 #if $evidences.bam: 23 #if $evidences.bam: