Mercurial > repos > genouest > braker3

diff braker3.xml @ 10:0be6820e3268 draft default tip

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planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit 43caacb959b2d7b842e71737bd645be7ad155a04
author genouest
date Thu, 17 Jul 2025 10:35:48 +0000
parents bec8f57c9d8e
children
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--- a/braker3.xml	Tue Jul 01 14:01:14 2025 +0000
+++ b/braker3.xml	Thu Jul 17 10:35:48 2025 +0000
@@ -10,6 +10,12 @@
         <expand macro="requirements"/>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
+
+## Copy Augustus config dir to work dir, to make sure it's writable when running with containers
+cp -r "\$AUGUSTUS_CONFIG_PATH/" augustus_dir/ &&
+export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ &&
+
+
 braker.pl
 --genome '${genome}'
 $softmasking