Mercurial > repos > genouest > feelnc2asko

comparison feelnc2asko.pl @ 1:af75f883cab4 draft

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planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/feelnc2asko commit 35a0acc7d7337781f376517f0ef821d836fc4bb9
author genouest
date Thu, 12 Apr 2018 10:51:05 -0400
parents e323c49b8bcc
children d30ecf96e4cd
comparison
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0:e323c49b8bcc 1:af75f883cab4
60 -primary_tag => 'gene', 60 -primary_tag => 'gene',
61 -source_tag => $feat->source_tag(), 61 -source_tag => $feat->source_tag(),
62 -seq_id => $feat->seq_id()); 62 -seq_id => $feat->seq_id());
63 # $geneft->add_tag_value("feelnc_type", "lncRNA"); 63 # $geneft->add_tag_value("feelnc_type", "lncRNA");
64 $genes{$gene}=$geneft; 64 $genes{$gene}=$geneft;
65 $geneft->add_tag_value("ID", $gene);
65 } 66 }
66 67
67 if (exists($transcripts{$mrna})) { 68 if (exists($transcripts{$mrna})) {
68 if ($transcripts{$mrna}->start() > $feat->start()) { 69 if ($transcripts{$mrna}->start() > $feat->start()) {
69 $transcripts{$mrna}->start($feat->start()); 70 $transcripts{$mrna}->start($feat->start());