Mercurial > repos > genouest > gcms2isocor

annotate gcms2isocor.xml @ 0:240ec5e4b0be draft

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"planemo upload commit 41761a4c85f45ca0467c87ee55d420eb060e09dd"
author genouest
date Tue, 05 Oct 2021 12:27:48 +0000
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children 6042d557e451
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240ec5e4b0be "planemo upload commit 41761a4c85f45ca0467c87ee55d420eb060e09dd"
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1 <tool id="gcms2isocor" name="Conversion GCMS PostRun Analysis to IsoCor" version="0.1.0" profile="21.05">
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2 <requirements>
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3 <requirement type="package" version="8.0.121">openjdk</requirement>
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4 </requirements>
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5 <command detect_errors="exit_code"><![CDATA[
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6 java -jar '$__tool_directory__/P2M2WorkflowsTools-assembly-0.1.jar'
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7 #for $input in $input_gcms_files
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8 #if $input
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9 $input
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10 #end if
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11 #end for
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12 --out '$output_isocor'
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13 ]]></command>
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14 <inputs>
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15 <param type="data" name="input_gcms_files" multiple="true" format="txt" />
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16 </inputs>
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17 <outputs>
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18 <data name="output_isocor" format="tsv" />
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19 </outputs>
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20 <tests>
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21 <test>
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22 <param name="input_gcms_files" value="13CPROT1.txt,13CPROT2.txt"/>
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23 <output name="output_isocor" file="input_isocor.tsv"/>
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24 </test>
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25 </tests>
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26 <help><![CDATA[
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27 Conversion from GCMS PostRun Analysis to Isocore.
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28 Processes GCMS files with the following categories: Header, MS Quantitative Results.
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29 ]]></help>
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30 </tool>