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comparison gcms2isocor.xml @ 0:240ec5e4b0be draft

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"planemo upload commit 41761a4c85f45ca0467c87ee55d420eb060e09dd"
author genouest
date Tue, 05 Oct 2021 12:27:48 +0000
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children 6042d557e451
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-1:000000000000 0:240ec5e4b0be
1 <tool id="gcms2isocor" name="Conversion GCMS PostRun Analysis to IsoCor" version="0.1.0" profile="21.05">
2 <requirements>
3 <requirement type="package" version="8.0.121">openjdk</requirement>
4 </requirements>
5 <command detect_errors="exit_code"><![CDATA[
6 java -jar '$__tool_directory__/P2M2WorkflowsTools-assembly-0.1.jar'
7 #for $input in $input_gcms_files
8 #if $input
9 $input
10 #end if
11 #end for
12 --out '$output_isocor'
13 ]]></command>
14 <inputs>
15 <param type="data" name="input_gcms_files" multiple="true" format="txt" />
16 </inputs>
17 <outputs>
18 <data name="output_isocor" format="tsv" />
19 </outputs>
20 <tests>
21 <test>
22 <param name="input_gcms_files" value="13CPROT1.txt,13CPROT2.txt"/>
23 <output name="output_isocor" file="input_isocor.tsv"/>
24 </test>
25 </tests>
26 <help><![CDATA[
27 Conversion from GCMS PostRun Analysis to Isocore.
28 Processes GCMS files with the following categories: Header, MS Quantitative Results.
29 ]]></help>
30 </tool>