annotate BamCoveragePlot.ga @ 3:11c1341242d2 draft

Uploaded
author getiria-onsongo
date Thu, 06 Dec 2012 12:54:35 -0500
parents dbd0bf3cc3f6
children
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1 {
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2 "a_galaxy_workflow": "true",
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3 "annotation": "",
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4 "format-version": "0.1",
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5 "name": "BamCoveragePlot",
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6 "steps": {
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7 "0": {
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8 "annotation": "This file contains mapped reads.",
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9 "id": 0,
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12 {
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13 "description": "This file contains mapped reads.",
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14 "name": "Input Dataset:bam"
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15 }
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16 ],
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17 "name": "Input dataset",
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18 "outputs": [],
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27 "type": "data_input",
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29 },
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30 "1": {
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31 "annotation": "Bed file defining the target of interest (intervals).",
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35 {
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36 "description": "Bed file defining the target of interest (intervals).",
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37 "name": "Input Dataset:bed"
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38 }
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39 ],
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40 "name": "Input dataset",
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41 "outputs": [],
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59 "description": "Points defining the X-axis.",
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60 "name": "Input Dataset:txt"
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61 }
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62 ],
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63 "name": "Input dataset",
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64 "outputs": [],
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73 "type": "data_input",
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76 "3": {
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77 "annotation": "Convert .bam file to pileup to obtain a file with bases overlapping mapped reads and depth of coverage for each of these base positions.",
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78 "id": 3,
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85 "inputs": [],
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86 "name": "Generate pileup",
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87 "outputs": [
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100 "tool_state": "{\"__page__\": 0, \"c\": \"{\\\"consensus\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"indels\": \"\\\"no\\\"\", \"refOrHistory\": \"{\\\"input1\\\": null, \\\"reference\\\": \\\"indexed\\\", \\\"__current_case__\\\": 0}\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"lastCol\": \"\\\"no\\\"\", \"mapCap\": \"\\\"60\\\"\"}",
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101 "tool_version": "1.1.1",
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105 "4": {
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106 "annotation": "Determine the total number of bases in the target region.",
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115 "name": "Base Coverage",
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116 "outputs": [
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129 "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
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130 "tool_version": "1.0.0",
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134 "5": {
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135 "annotation": "Add a column (base - 1) which will enable conversion from pile up to interval format.",
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164 "annotation": "Extract columns c1, c2, c4 and c7 and re-arrange them to convert the pileup data to interval data (c1,c7,c2,c4) while retaining coverage information (c4).",
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195 "tool_state": "{\"columnList\": \"\\\"c1,c7,c2,c4\\\"\", \"input\": \"null\", \"delimiter\": \"\\\"T\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"__page__\": 0}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
196 "tool_version": "1.0.1",
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getiria-onsongo
parents:
diff changeset
197 "type": "tool",
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getiria-onsongo
parents:
diff changeset
198 "user_outputs": []
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getiria-onsongo
parents:
diff changeset
199 },
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getiria-onsongo
parents:
diff changeset
200 "7": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
201 "annotation": "Determine bases with 1X coverage that overlap with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
202 "id": 7,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
203 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
204 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
205 "id": 6,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
206 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
207 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
208 "input2": {
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getiria-onsongo
parents:
diff changeset
209 "id": 1,
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getiria-onsongo
parents:
diff changeset
210 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
211 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
212 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
213 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
214 "name": "Intersect",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
215 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
216 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
217 "name": "output",
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getiria-onsongo
parents:
diff changeset
218 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
219 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
220 ],
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getiria-onsongo
parents:
diff changeset
221 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
222 "left": 1276,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
223 "top": 171
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
224 },
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getiria-onsongo
parents:
diff changeset
225 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
226 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
227 "tool_id": "gops_intersect_1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
228 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"min\": \"\\\"1\\\"\", \"returntype\": \"\\\"\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
229 "tool_version": "1.0.0",
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getiria-onsongo
parents:
diff changeset
230 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
231 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
232 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
233 "8": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
234 "annotation": "Count the total number of bases with 1X coverage overlapping with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
235 "id": 8,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
236 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
237 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
238 "id": 7,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
239 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
240 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
241 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
242 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
243 "name": "Base Coverage",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
244 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
245 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
246 "name": "output",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
247 "type": "txt"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
248 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
249 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
250 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
251 "left": 1520,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
252 "top": 200
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
253 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
254 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
255 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
256 "tool_id": "gops_basecoverage_1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
257 "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
258 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
259 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
260 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
261 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
262 "9": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
263 "annotation": "Determine bases with 5X coverage that overlap with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
264 "id": 9,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
265 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
266 "input": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
267 "id": 7,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
268 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
269 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
270 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
271 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
272 "name": "Filter",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
273 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
274 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
275 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
276 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
277 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
278 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
279 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
280 "left": 1520,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
281 "top": 320
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
282 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
283 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
284 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
285 "tool_id": "Filter1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
286 "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 5\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
287 "tool_version": "1.1.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
288 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
289 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
290 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
291 "10": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
292 "annotation": "",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
293 "id": 10,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
294 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
295 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
296 "id": 4,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
297 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
298 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
299 "input2": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
300 "id": 8,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
301 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
302 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
303 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
304 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
305 "name": "Paste",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
306 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
307 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
308 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
309 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
310 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
311 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
312 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
313 "left": 1740,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
314 "top": 200
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
315 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
316 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
317 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
318 "tool_id": "Paste1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
319 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
320 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
321 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
322 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
323 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
324 "11": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
325 "annotation": "Count the total number of bases with 5X coverage overlapping with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
326 "id": 11,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
327 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
328 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
329 "id": 9,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
330 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
331 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
332 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
333 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
334 "name": "Base Coverage",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
335 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
336 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
337 "name": "output",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
338 "type": "txt"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
339 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
340 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
341 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
342 "left": 1740,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
343 "top": 320
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
344 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
345 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
346 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
347 "tool_id": "gops_basecoverage_1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
348 "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
349 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
350 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
351 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
352 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
353 "12": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
354 "annotation": "Determine bases with 10X coverage that overlap with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
355 "id": 12,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
356 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
357 "input": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
358 "id": 9,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
359 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
360 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
361 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
362 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
363 "name": "Filter",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
364 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
365 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
366 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
367 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
368 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
369 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
370 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
371 "left": 1740,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
372 "top": 440
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
373 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
374 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
375 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
376 "tool_id": "Filter1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
377 "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 10\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
378 "tool_version": "1.1.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
379 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
380 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
381 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
382 "13": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
383 "annotation": "",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
384 "id": 13,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
385 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
386 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
387 "id": 4,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
388 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
389 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
390 "input2": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
391 "id": 11,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
392 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
393 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
394 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
395 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
396 "name": "Paste",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
397 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
398 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
399 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
400 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
401 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
402 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
403 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
404 "left": 1960,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
405 "top": 200
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
406 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
407 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
408 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
409 "tool_id": "Paste1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
410 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
411 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
412 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
413 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
414 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
415 "14": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
416 "annotation": "Count the total number of bases with 10X coverage overlapping with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
417 "id": 14,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
418 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
419 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
420 "id": 12,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
421 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
422 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
423 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
424 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
425 "name": "Base Coverage",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
426 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
427 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
428 "name": "output",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
429 "type": "txt"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
430 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
431 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
432 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
433 "left": 1960,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
434 "top": 320
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
435 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
436 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
437 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
438 "tool_id": "gops_basecoverage_1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
439 "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
440 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
441 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
442 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
443 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
444 "15": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
445 "annotation": "Determine bases with 20X coverage that overlap with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
446 "id": 15,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
447 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
448 "input": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
449 "id": 12,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
450 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
451 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
452 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
453 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
454 "name": "Filter",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
455 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
456 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
457 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
458 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
459 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
460 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
461 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
462 "left": 1960,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
463 "top": 440
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
464 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
465 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
466 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
467 "tool_id": "Filter1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
468 "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 20\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
469 "tool_version": "1.1.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
470 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
471 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
472 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
473 "16": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
474 "annotation": "",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
475 "id": 16,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
476 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
477 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
478 "id": 4,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
479 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
480 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
481 "input2": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
482 "id": 14,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
483 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
484 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
485 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
486 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
487 "name": "Paste",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
488 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
489 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
490 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
491 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
492 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
493 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
494 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
495 "left": 2180,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
496 "top": 200
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
497 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
498 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
499 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
500 "tool_id": "Paste1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
501 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
502 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
503 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
504 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
505 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
506 "17": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
507 "annotation": "Count the total number of bases with 20X coverage overlapping with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
508 "id": 17,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
509 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
510 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
511 "id": 15,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
512 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
513 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
514 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
515 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
516 "name": "Base Coverage",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
517 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
518 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
519 "name": "output",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
520 "type": "txt"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
521 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
522 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
523 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
524 "left": 2180,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
525 "top": 320
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
526 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
527 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
528 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
529 "tool_id": "gops_basecoverage_1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
530 "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
531 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
532 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
533 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
534 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
535 "18": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
536 "annotation": "Determine bases with 30X coverage that overlap with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
537 "id": 18,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
538 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
539 "input": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
540 "id": 15,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
541 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
542 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
543 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
544 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
545 "name": "Filter",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
546 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
547 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
548 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
549 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
550 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
551 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
552 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
553 "left": 2180,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
554 "top": 440
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
555 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
556 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
557 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
558 "tool_id": "Filter1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
559 "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 30\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
560 "tool_version": "1.1.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
561 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
562 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
563 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
564 "19": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
565 "annotation": "",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
566 "id": 19,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
567 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
568 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
569 "id": 4,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
570 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
571 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
572 "input2": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
573 "id": 17,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
574 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
575 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
576 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
577 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
578 "name": "Paste",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
579 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
580 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
581 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
582 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
583 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
584 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
585 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
586 "left": 2400,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
587 "top": 200
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
588 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
589 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
590 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
591 "tool_id": "Paste1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
592 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
593 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
594 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
595 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
596 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
597 "20": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
598 "annotation": "Count the total number of bases with 30X coverage overlapping with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
599 "id": 20,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
600 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
601 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
602 "id": 18,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
603 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
604 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
605 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
606 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
607 "name": "Base Coverage",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
608 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
609 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
610 "name": "output",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
611 "type": "txt"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
612 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
613 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
614 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
615 "left": 2417,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
616 "top": 321
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
617 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
618 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
619 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
620 "tool_id": "gops_basecoverage_1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
621 "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
622 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
623 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
624 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
625 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
626 "21": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
627 "annotation": "Determine bases with 40X coverage that overlap with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
628 "id": 21,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
629 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
630 "input": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
631 "id": 18,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
632 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
633 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
634 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
635 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
636 "name": "Filter",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
637 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
638 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
639 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
640 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
641 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
642 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
643 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
644 "left": 2400,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
645 "top": 440
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
646 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
647 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
648 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
649 "tool_id": "Filter1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
650 "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 40\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
651 "tool_version": "1.1.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
652 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
653 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
654 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
655 "22": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
656 "annotation": "",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
657 "id": 22,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
658 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
659 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
660 "id": 4,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
661 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
662 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
663 "input2": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
664 "id": 20,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
665 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
666 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
667 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
668 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
669 "name": "Paste",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
670 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
671 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
672 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
673 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
674 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
675 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
676 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
677 "left": 2620,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
678 "top": 200
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
679 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
680 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
681 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
682 "tool_id": "Paste1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
683 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
684 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
685 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
686 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
687 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
688 "23": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
689 "annotation": "Count the total number of bases with 40X coverage overlapping with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
690 "id": 23,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
691 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
692 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
693 "id": 21,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
694 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
695 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
696 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
697 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
698 "name": "Base Coverage",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
699 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
700 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
701 "name": "output",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
702 "type": "txt"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
703 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
704 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
705 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
706 "left": 2620,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
707 "top": 320
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
708 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
709 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
710 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
711 "tool_id": "gops_basecoverage_1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
712 "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
713 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
714 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
715 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
716 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
717 "24": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
718 "annotation": "Determine bases with 60X coverage that overlap with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
719 "id": 24,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
720 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
721 "input": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
722 "id": 21,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
723 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
724 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
725 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
726 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
727 "name": "Filter",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
728 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
729 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
730 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
731 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
732 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
733 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
734 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
735 "left": 2620,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
736 "top": 440
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
737 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
738 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
739 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
740 "tool_id": "Filter1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
741 "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 60\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
742 "tool_version": "1.1.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
743 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
744 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
745 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
746 "25": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
747 "annotation": "",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
748 "id": 25,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
749 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
750 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
751 "id": 4,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
752 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
753 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
754 "input2": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
755 "id": 23,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
756 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
757 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
758 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
759 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
760 "name": "Paste",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
761 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
762 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
763 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
764 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
765 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
766 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
767 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
768 "left": 2840,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
769 "top": 200
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
770 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
771 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
772 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
773 "tool_id": "Paste1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
774 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
775 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
776 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
777 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
778 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
779 "26": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
780 "annotation": "Count the total number of bases with 60X coverage overlapping with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
781 "id": 26,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
782 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
783 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
784 "id": 24,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
785 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
786 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
787 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
788 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
789 "name": "Base Coverage",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
790 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
791 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
792 "name": "output",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
793 "type": "txt"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
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diff changeset
794 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
795 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
796 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
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diff changeset
797 "left": 2840,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
798 "top": 320
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
799 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
800 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
801 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
802 "tool_id": "gops_basecoverage_1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
803 "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
804 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
805 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
806 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
807 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
808 "27": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
809 "annotation": "Determine bases with 80X coverage that overlap with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
810 "id": 27,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
811 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
812 "input": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
813 "id": 24,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
814 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
815 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
816 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
817 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
818 "name": "Filter",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
819 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
820 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
821 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
822 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
823 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
824 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
825 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
826 "left": 2840,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
827 "top": 440
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
828 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
829 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
830 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
831 "tool_id": "Filter1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
832 "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 80\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
833 "tool_version": "1.1.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
834 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
835 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
836 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
837 "28": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
838 "annotation": "",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
839 "id": 28,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
840 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
841 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
842 "id": 4,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
843 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
844 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
845 "input2": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
846 "id": 26,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
847 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
848 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
849 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
850 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
851 "name": "Paste",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
852 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
853 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
854 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
855 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
856 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
857 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
858 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
859 "left": 3060,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
860 "top": 200
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
861 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
862 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
863 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
864 "tool_id": "Paste1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
865 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
866 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
867 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
868 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
869 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
870 "29": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
871 "annotation": "Count the total number of bases with 80X coverage overlapping with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
872 "id": 29,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
873 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
874 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
875 "id": 27,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
876 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
877 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
878 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
879 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
880 "name": "Base Coverage",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
881 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
882 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
883 "name": "output",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
884 "type": "txt"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
885 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
886 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
887 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
888 "left": 3060,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
889 "top": 320
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
890 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
891 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
892 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
893 "tool_id": "gops_basecoverage_1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
894 "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
895 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
896 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
897 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
898 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
899 "30": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
900 "annotation": "Determine bases with 120X coverage that overlap with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
901 "id": 30,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
902 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
903 "input": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
904 "id": 27,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
905 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
906 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
907 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
908 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
909 "name": "Filter",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
910 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
911 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
912 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
913 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
914 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
915 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
916 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
917 "left": 3060,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
918 "top": 440
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
919 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
920 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
921 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
922 "tool_id": "Filter1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
923 "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 120\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
924 "tool_version": "1.1.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
925 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
926 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
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diff changeset
927 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
928 "31": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
929 "annotation": "",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
930 "id": 31,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
931 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
932 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
933 "id": 4,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
934 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
935 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
936 "input2": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
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dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
938 "output_name": "output"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
939 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
940 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
941 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
942 "name": "Paste",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
943 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
944 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
945 "name": "out_file1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
946 "type": "input"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
947 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
948 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
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diff changeset
949 "position": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
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dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
951 "top": 200
dbd0bf3cc3f6 Uploaded
getiria-onsongo
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diff changeset
952 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
953 "post_job_actions": {},
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
954 "tool_errors": null,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
955 "tool_id": "Paste1",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
956 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
957 "tool_version": "1.0.0",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
958 "type": "tool",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
959 "user_outputs": []
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
960 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
961 "32": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
962 "annotation": "Count the total number of bases with 120X coverage overlapping with the target region.",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
963 "id": 32,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
964 "input_connections": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
965 "input1": {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
966 "id": 30,
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
967 "output_name": "out_file1"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
968 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
969 },
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
970 "inputs": [],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
971 "name": "Base Coverage",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
972 "outputs": [
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
973 {
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
974 "name": "output",
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
975 "type": "txt"
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
976 }
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
diff changeset
977 ],
dbd0bf3cc3f6 Uploaded
getiria-onsongo
parents:
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