{
    "a_galaxy_workflow": "true", 
    "annotation": "", 
    "format-version": "0.1", 
    "name": "BamCoveragePlot", 
    "steps": {
        "0": {
            "annotation": "This file contains mapped reads.", 
            "id": 0, 
            "input_connections": {}, 
            "inputs": [
                {
                    "description": "This file contains mapped reads.", 
                    "name": "Input Dataset:bam"
                }
            ], 
            "name": "Input dataset", 
            "outputs": [], 
            "position": {
                "left": 200, 
                "top": 199
            }, 
            "tool_errors": null, 
            "tool_id": null, 
            "tool_state": "{\"name\": \"Input Dataset:bam\"}", 
            "tool_version": null, 
            "type": "data_input", 
            "user_outputs": []
        }, 
        "1": {
            "annotation": "Bed file defining the target of interest (intervals).", 
            "id": 1, 
            "input_connections": {}, 
            "inputs": [
                {
                    "description": "Bed file defining the target of interest (intervals).", 
                    "name": "Input Dataset:bed"
                }
            ], 
            "name": "Input dataset", 
            "outputs": [], 
            "position": {
                "left": 200, 
                "top": 320
            }, 
            "tool_errors": null, 
            "tool_id": null, 
            "tool_state": "{\"name\": \"Input Dataset:bed\"}", 
            "tool_version": null, 
            "type": "data_input", 
            "user_outputs": []
        }, 
        "2": {
            "annotation": "Points defining the X-axis.", 
            "id": 2, 
            "input_connections": {}, 
            "inputs": [
                {
                    "description": "Points defining the X-axis.", 
                    "name": "Input Dataset:txt"
                }
            ], 
            "name": "Input dataset", 
            "outputs": [], 
            "position": {
                "left": 200, 
                "top": 440
            }, 
            "tool_errors": null, 
            "tool_id": null, 
            "tool_state": "{\"name\": \"Input Dataset:txt\"}", 
            "tool_version": null, 
            "type": "data_input", 
            "user_outputs": []
        }, 
        "3": {
            "annotation": "Convert .bam file to pileup to obtain a file with bases overlapping mapped reads and depth of coverage for each of these base positions.", 
            "id": 3, 
            "input_connections": {
                "refOrHistory|input1": {
                    "id": 0, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Generate pileup", 
            "outputs": [
                {
                    "name": "output1", 
                    "type": "tabular"
                }
            ], 
            "position": {
                "left": 507, 
                "top": 184
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "sam_pileup", 
            "tool_state": "{\"__page__\": 0, \"c\": \"{\\\"consensus\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"indels\": \"\\\"no\\\"\", \"refOrHistory\": \"{\\\"input1\\\": null, \\\"reference\\\": \\\"indexed\\\", \\\"__current_case__\\\": 0}\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"lastCol\": \"\\\"no\\\"\", \"mapCap\": \"\\\"60\\\"\"}", 
            "tool_version": "1.1.1", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "4": {
            "annotation": "Determine the total number of bases in the  target region.", 
            "id": 4, 
            "input_connections": {
                "input1": {
                    "id": 1, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Base Coverage", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 420, 
                "top": 320
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_basecoverage_1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "5": {
            "annotation": "Add a column (base - 1) which will enable conversion from pile up to interval format.", 
            "id": 5, 
            "input_connections": {
                "input": {
                    "id": 3, 
                    "output_name": "output1"
                }
            }, 
            "inputs": [], 
            "name": "Compute", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 860, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Add_a_column1", 
            "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c2-1\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"round\": \"\\\"yes\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.1.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "6": {
            "annotation": "Extract columns c1, c2, c4 and c7 and re-arrange them to convert the pileup data to interval data (c1,c7,c2,c4) while retaining coverage information (c4).", 
            "id": 6, 
            "input_connections": {
                "input": {
                    "id": 5, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Cut", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "tabular"
                }
            ], 
            "position": {
                "left": 1085, 
                "top": 206
            }, 
            "post_job_actions": {
                "ChangeDatatypeActionout_file1": {
                    "action_arguments": {
                        "newtype": "interval"
                    }, 
                    "action_type": "ChangeDatatypeAction", 
                    "output_name": "out_file1"
                }
            }, 
            "tool_errors": null, 
            "tool_id": "Cut1", 
            "tool_state": "{\"columnList\": \"\\\"c1,c7,c2,c4\\\"\", \"input\": \"null\", \"delimiter\": \"\\\"T\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"__page__\": 0}", 
            "tool_version": "1.0.1", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "7": {
            "annotation": "Determine bases with 1X coverage that overlap with the target region.", 
            "id": 7, 
            "input_connections": {
                "input1": {
                    "id": 6, 
                    "output_name": "out_file1"
                }, 
                "input2": {
                    "id": 1, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Intersect", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 1276, 
                "top": 171
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_intersect_1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"min\": \"\\\"1\\\"\", \"returntype\": \"\\\"\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "8": {
            "annotation": "Count the total number of bases with 1X coverage overlapping with the target region.", 
            "id": 8, 
            "input_connections": {
                "input1": {
                    "id": 7, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Base Coverage", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 1520, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_basecoverage_1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "9": {
            "annotation": "Determine bases with 5X coverage that overlap with the target region.", 
            "id": 9, 
            "input_connections": {
                "input": {
                    "id": 7, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Filter", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 1520, 
                "top": 320
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Filter1", 
            "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 5\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.1.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "10": {
            "annotation": "", 
            "id": 10, 
            "input_connections": {
                "input1": {
                    "id": 4, 
                    "output_name": "output"
                }, 
                "input2": {
                    "id": 8, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Paste", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 1740, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Paste1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "11": {
            "annotation": "Count the total number of bases with 5X coverage overlapping with the target region.", 
            "id": 11, 
            "input_connections": {
                "input1": {
                    "id": 9, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Base Coverage", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 1740, 
                "top": 320
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_basecoverage_1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "12": {
            "annotation": "Determine bases with 10X coverage that overlap with the target region.", 
            "id": 12, 
            "input_connections": {
                "input": {
                    "id": 9, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Filter", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 1740, 
                "top": 440
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Filter1", 
            "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 10\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.1.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "13": {
            "annotation": "", 
            "id": 13, 
            "input_connections": {
                "input1": {
                    "id": 4, 
                    "output_name": "output"
                }, 
                "input2": {
                    "id": 11, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Paste", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 1960, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Paste1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "14": {
            "annotation": "Count the total number of bases with 10X coverage overlapping with the target region.", 
            "id": 14, 
            "input_connections": {
                "input1": {
                    "id": 12, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Base Coverage", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 1960, 
                "top": 320
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_basecoverage_1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "15": {
            "annotation": "Determine bases with 20X coverage that overlap with the target region.", 
            "id": 15, 
            "input_connections": {
                "input": {
                    "id": 12, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Filter", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 1960, 
                "top": 440
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Filter1", 
            "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 20\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.1.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "16": {
            "annotation": "", 
            "id": 16, 
            "input_connections": {
                "input1": {
                    "id": 4, 
                    "output_name": "output"
                }, 
                "input2": {
                    "id": 14, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Paste", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 2180, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Paste1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "17": {
            "annotation": "Count the total number of bases with 20X coverage overlapping with the target region.", 
            "id": 17, 
            "input_connections": {
                "input1": {
                    "id": 15, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Base Coverage", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 2180, 
                "top": 320
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_basecoverage_1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "18": {
            "annotation": "Determine bases with 30X coverage that overlap with the target region.", 
            "id": 18, 
            "input_connections": {
                "input": {
                    "id": 15, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Filter", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 2180, 
                "top": 440
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Filter1", 
            "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 30\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.1.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "19": {
            "annotation": "", 
            "id": 19, 
            "input_connections": {
                "input1": {
                    "id": 4, 
                    "output_name": "output"
                }, 
                "input2": {
                    "id": 17, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Paste", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 2400, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Paste1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "20": {
            "annotation": "Count the total number of bases with 30X coverage overlapping with the target region.", 
            "id": 20, 
            "input_connections": {
                "input1": {
                    "id": 18, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Base Coverage", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 2417, 
                "top": 321
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_basecoverage_1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "21": {
            "annotation": "Determine bases with 40X coverage that overlap with the target region.", 
            "id": 21, 
            "input_connections": {
                "input": {
                    "id": 18, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Filter", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 2400, 
                "top": 440
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Filter1", 
            "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 40\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.1.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "22": {
            "annotation": "", 
            "id": 22, 
            "input_connections": {
                "input1": {
                    "id": 4, 
                    "output_name": "output"
                }, 
                "input2": {
                    "id": 20, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Paste", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 2620, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Paste1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "23": {
            "annotation": "Count the total number of bases with 40X coverage overlapping with the target region.", 
            "id": 23, 
            "input_connections": {
                "input1": {
                    "id": 21, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Base Coverage", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 2620, 
                "top": 320
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_basecoverage_1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "24": {
            "annotation": "Determine bases with 60X coverage that overlap with the target region.", 
            "id": 24, 
            "input_connections": {
                "input": {
                    "id": 21, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Filter", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 2620, 
                "top": 440
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Filter1", 
            "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 60\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.1.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "25": {
            "annotation": "", 
            "id": 25, 
            "input_connections": {
                "input1": {
                    "id": 4, 
                    "output_name": "output"
                }, 
                "input2": {
                    "id": 23, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Paste", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 2840, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Paste1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "26": {
            "annotation": "Count the total number of bases with 60X coverage overlapping with the target region.", 
            "id": 26, 
            "input_connections": {
                "input1": {
                    "id": 24, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Base Coverage", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 2840, 
                "top": 320
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_basecoverage_1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "27": {
            "annotation": "Determine bases with 80X coverage that overlap with the target region.", 
            "id": 27, 
            "input_connections": {
                "input": {
                    "id": 24, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Filter", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 2840, 
                "top": 440
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Filter1", 
            "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 80\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.1.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "28": {
            "annotation": "", 
            "id": 28, 
            "input_connections": {
                "input1": {
                    "id": 4, 
                    "output_name": "output"
                }, 
                "input2": {
                    "id": 26, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Paste", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 3060, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Paste1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "29": {
            "annotation": "Count the total number of bases with 80X coverage overlapping with the target region.", 
            "id": 29, 
            "input_connections": {
                "input1": {
                    "id": 27, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Base Coverage", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 3060, 
                "top": 320
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_basecoverage_1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "30": {
            "annotation": "Determine bases with 120X coverage that overlap with the target region.", 
            "id": 30, 
            "input_connections": {
                "input": {
                    "id": 27, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Filter", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 3060, 
                "top": 440
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Filter1", 
            "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 120\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.1.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "31": {
            "annotation": "", 
            "id": 31, 
            "input_connections": {
                "input1": {
                    "id": 4, 
                    "output_name": "output"
                }, 
                "input2": {
                    "id": 29, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Paste", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 3280, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Paste1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "32": {
            "annotation": "Count the total number of bases with 120X coverage overlapping with the target region.", 
            "id": 32, 
            "input_connections": {
                "input1": {
                    "id": 30, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Base Coverage", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 3280, 
                "top": 320
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_basecoverage_1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "33": {
            "annotation": "Determine bases with 160X coverage that overlap with the target region.", 
            "id": 33, 
            "input_connections": {
                "input": {
                    "id": 30, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Filter", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 3280, 
                "top": 440
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Filter1", 
            "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 160\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.1.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "34": {
            "annotation": "", 
            "id": 34, 
            "input_connections": {
                "input1": {
                    "id": 4, 
                    "output_name": "output"
                }, 
                "input2": {
                    "id": 32, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Paste", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 3500, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Paste1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "35": {
            "annotation": "Count the total number of bases with 160X coverage overlapping with the target region.", 
            "id": 35, 
            "input_connections": {
                "input1": {
                    "id": 33, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Base Coverage", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 3500, 
                "top": 320
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_basecoverage_1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "36": {
            "annotation": "Determine bases with 180X coverage that overlap with the target region.", 
            "id": 36, 
            "input_connections": {
                "input": {
                    "id": 33, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Filter", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 3500, 
                "top": 440
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Filter1", 
            "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 180\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.1.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "37": {
            "annotation": "", 
            "id": 37, 
            "input_connections": {
                "input1": {
                    "id": 4, 
                    "output_name": "output"
                }, 
                "input2": {
                    "id": 35, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Paste", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 3720, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Paste1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "38": {
            "annotation": "Count the total number of bases with 180X coverage overlapping with the target region.", 
            "id": 38, 
            "input_connections": {
                "input1": {
                    "id": 36, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Base Coverage", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 3720, 
                "top": 320
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_basecoverage_1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "39": {
            "annotation": "Determine bases with 200X coverage that overlap with the target region.", 
            "id": 39, 
            "input_connections": {
                "input": {
                    "id": 36, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Filter", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 3720, 
                "top": 440
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Filter1", 
            "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c4 >= 200\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.1.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "40": {
            "annotation": "", 
            "id": 40, 
            "input_connections": {
                "input1": {
                    "id": 4, 
                    "output_name": "output"
                }, 
                "input2": {
                    "id": 38, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Paste", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 3940, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Paste1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "41": {
            "annotation": "Count the total number of bases with 200X coverage overlapping with the target region.", 
            "id": 41, 
            "input_connections": {
                "input1": {
                    "id": 39, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Base Coverage", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "txt"
                }
            ], 
            "position": {
                "left": 3940, 
                "top": 320
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "gops_basecoverage_1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "42": {
            "annotation": "", 
            "id": 42, 
            "input_connections": {
                "input1": {
                    "id": 4, 
                    "output_name": "output"
                }, 
                "input2": {
                    "id": 41, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Paste", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 4160, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Paste1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "43": {
            "annotation": "", 
            "id": 43, 
            "input_connections": {
                "input1": {
                    "id": 10, 
                    "output_name": "out_file1"
                }, 
                "queries_0|input2": {
                    "id": 13, 
                    "output_name": "out_file1"
                }, 
                "queries_10|input2": {
                    "id": 42, 
                    "output_name": "out_file1"
                }, 
                "queries_1|input2": {
                    "id": 16, 
                    "output_name": "out_file1"
                }, 
                "queries_2|input2": {
                    "id": 19, 
                    "output_name": "out_file1"
                }, 
                "queries_3|input2": {
                    "id": 22, 
                    "output_name": "out_file1"
                }, 
                "queries_4|input2": {
                    "id": 25, 
                    "output_name": "out_file1"
                }, 
                "queries_5|input2": {
                    "id": 28, 
                    "output_name": "out_file1"
                }, 
                "queries_6|input2": {
                    "id": 31, 
                    "output_name": "out_file1"
                }, 
                "queries_7|input2": {
                    "id": 34, 
                    "output_name": "out_file1"
                }, 
                "queries_8|input2": {
                    "id": 37, 
                    "output_name": "out_file1"
                }, 
                "queries_9|input2": {
                    "id": 40, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Concatenate datasets", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 4380, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "cat1", 
            "tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"queries\": \"[{\\\"input2\\\": null, \\\"__index__\\\": 0}, {\\\"input2\\\": null, \\\"__index__\\\": 1}, {\\\"input2\\\": null, \\\"__index__\\\": 2}, {\\\"input2\\\": null, \\\"__index__\\\": 3}, {\\\"input2\\\": null, \\\"__index__\\\": 4}, {\\\"input2\\\": null, \\\"__index__\\\": 5}, {\\\"input2\\\": null, \\\"__index__\\\": 6}, {\\\"input2\\\": null, \\\"__index__\\\": 7}, {\\\"input2\\\": null, \\\"__index__\\\": 8}, {\\\"input2\\\": null, \\\"__index__\\\": 9}, {\\\"input2\\\": null, \\\"__index__\\\": 10}]\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "44": {
            "annotation": "", 
            "id": 44, 
            "input_connections": {
                "input": {
                    "id": 43, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Convert", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "tabular"
                }
            ], 
            "position": {
                "left": 4600, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Convert characters1", 
            "tool_state": "{\"__page__\": 0, \"convert_from\": \"\\\"s\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "45": {
            "annotation": "", 
            "id": 45, 
            "input_connections": {
                "input": {
                    "id": 44, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Compute", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 4820, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Add_a_column1", 
            "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"(c2/c1)*100\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"round\": \"\\\"no\\\"\", \"input\": \"null\"}", 
            "tool_version": "1.1.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "46": {
            "annotation": "", 
            "id": 46, 
            "input_connections": {
                "input": {
                    "id": 45, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Cut", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "tabular"
                }
            ], 
            "position": {
                "left": 5040, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Cut1", 
            "tool_state": "{\"columnList\": \"\\\"c3\\\"\", \"input\": \"null\", \"delimiter\": \"\\\"T\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"__page__\": 0}", 
            "tool_version": "1.0.1", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "47": {
            "annotation": "", 
            "id": 47, 
            "input_connections": {
                "input1": {
                    "id": 2, 
                    "output_name": "output"
                }, 
                "input2": {
                    "id": 46, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Paste", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "input"
                }
            ], 
            "position": {
                "left": 5260, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "Paste1", 
            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"delimiter\": \"\\\"T\\\"\", \"input1\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "48": {
            "annotation": "", 
            "id": 48, 
            "input_connections": {
                "series_0|input": {
                    "id": 47, 
                    "output_name": "out_file1"
                }, 
                "series_1|input": {
                    "id": 47, 
                    "output_name": "out_file1"
                }
            }, 
            "inputs": [], 
            "name": "Plotting tool", 
            "outputs": [
                {
                    "name": "out_file1", 
                    "type": "pdf"
                }
            ], 
            "position": {
                "left": 5480, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "XY_Plot_1", 
            "tool_state": "{\"__page__\": 0, \"xlab\": \"\\\"Coverage\\\"\", \"series\": \"[{\\\"__index__\\\": 0, \\\"xcol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"1\\\"}, \\\"series_type\\\": {\\\"lty\\\": \\\"1\\\", \\\"lwd\\\": \\\"1.0\\\", \\\"type\\\": \\\"line\\\", \\\"col\\\": \\\"2\\\", \\\"__current_case__\\\": 0}, \\\"ycol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"2\\\"}, \\\"input\\\": null}, {\\\"__index__\\\": 1, \\\"xcol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"1\\\"}, \\\"series_type\\\": {\\\"pch\\\": \\\"1\\\", \\\"type\\\": \\\"points\\\", \\\"col\\\": \\\"4\\\", \\\"__current_case__\\\": 1, \\\"cex\\\": \\\"1.0\\\"}, \\\"ycol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"2\\\"}, \\\"input\\\": null}]\", \"ylab\": \"\\\"Percent of Bases\\\"\", \"main\": \"\\\"Percent of Bases vs Coverage\\\"\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}", 
            "tool_version": "1.0.1", 
            "type": "tool", 
            "user_outputs": []
        }
    }
}