Mercurial > repos > gga > apollo_delete_organism

comparison delete_organism.xml @ 5:0af4179e6758 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 85194fa009ead2c34720faab61a4143fc29d17c2
author gga
date Fri, 31 Aug 2018 09:34:10 -0400
parents a5de2095bd01
children 1575f11ac6fc
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4:a5de2095bd01 5:0af4179e6758
14 @ADMIN_AUTH@ 14 @ADMIN_AUTH@
15 @ORG_OR_GUESS@ 15 @ORG_OR_GUESS@
16 --gff "$gff_out" 16 --gff "$gff_out"
17 --fasta "$fasta_out" 17 --fasta "$fasta_out"
18 --json "$json_out" 18 --json "$json_out"
19 "$__user_email__"
19 20
20 && 21 &&
21 22
22 ## Now we delete 23 ## Now we delete
23 python $__tool_directory__/delete_organism.py 24 python $__tool_directory__/delete_organism.py
36 <expand macro="org_or_guess" /> 37 <expand macro="org_or_guess" />
37 <param name="ask_one" type="boolean" truevalue="yes" falsevalue="" label="Are you SURE you want to do this?" help="It will PERMANENTLY delete all of the features on this organism."/> 38 <param name="ask_one" type="boolean" truevalue="yes" falsevalue="" label="Are you SURE you want to do this?" help="It will PERMANENTLY delete all of the features on this organism."/>
38 <param name="ask_two" type="boolean" truevalue="yes" falsevalue="" label="Are you really, really SURE you want to do this?" help="There's NO coming back from this."/> 39 <param name="ask_two" type="boolean" truevalue="yes" falsevalue="" label="Are you really, really SURE you want to do this?" help="There's NO coming back from this."/>
39 </inputs> 40 </inputs>
40 <outputs> 41 <outputs>
41 <data format="tabular" name="output" label="Process and Error Log"/> 42 <data format="tabular" name="output" label="Process and Error Log">
43 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.txt" format="tabular" visible="true"/>
44 </data>
42 45
43 <data format="gff3" name="gff_out" label="Annotations from Apollo" hidden="true"/> 46 <data format="gff3" name="gff_out" label="Annotations from Apollo" hidden="true"/>
44 <data format="fasta" name="fasta_out" label="Sequence(s) from Apollo" hidden="true"/> 47 <data format="fasta" name="fasta_out" label="Sequence(s) from Apollo" hidden="true"/>
45 <data format="json" name="json_out" label="Metadata from Apollo" hidden="true"/> 48 <data format="json" name="json_out" label="Metadata from Apollo" hidden="true"/>
46 </outputs> 49 </outputs>