Mercurial > repos > gga > apollo_list_organism

annotate list_organisms.xml @ 17:8dc690130172 draft default tip

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 12282c16658b37858f49944796fd95515ef0fc0b
author gga
date Wed, 11 Jan 2023 11:48:41 +0000
parents 06254eb0cb13
children
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1f2e360f7554 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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1 <?xml version="1.0"?>
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2 <tool id="list_organism" name="List Organisms" version="@WRAPPER_VERSION@">
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3 <description>in Apollo</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <command detect_errors="aggressive"><![CDATA[
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9 @AUTH@
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11 python '$__tool_directory__/list_organisms.py'
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12 '$__user_email__'
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13 > '$output']]></command>
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1f2e360f7554 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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14 <inputs>
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15 </inputs>
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16 <outputs>
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17 <data format="json" name="output">
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18 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.txt" format="tabular" visible="true"/>
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19 </data>
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20 </outputs>
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21 <tests>
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22 <test>
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23 <output name="output">
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24 <assert_contents>
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25 <has_text text="alt_org" />
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26 <has_text text="test_organism" />
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27 <has_text text="Testus" />
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28 </assert_contents>
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29 </output>
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30 </test>
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31 </tests>
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32 <help><![CDATA[
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33 **What it does**
1f2e360f7554 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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35 Lists organism in Apollo
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37 @REFERENCES@
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38 ]]></help>
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39 <expand macro="citations"/>
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40 </tool>