Mercurial > repos > gga > apollo_list_organism

diff list_organisms.xml @ 10:bc2b80fc7e30 draft

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 08015be1ee8a784e0619f961aaa724857debfd6f"
author gga
date Mon, 02 Dec 2019 05:49:03 -0500
parents f26ac3b582e1
children 06254eb0cb13
line wrap: on
line diff
--- a/list_organisms.xml	Mon Jul 29 10:10:25 2019 -0400
+++ b/list_organisms.xml	Mon Dec 02 05:49:03 2019 -0500
@@ -6,10 +6,11 @@
   </macros>
   <expand macro="requirements"/>
   <command detect_errors="aggressive"><![CDATA[
-python $__tool_directory__/list_organisms.py
-@ADMIN_AUTH@
-$__user_email__
-> $output]]></command>
+@AUTH@
+
+python '$__tool_directory__/list_organisms.py'
+'$__user_email__'
+> '$output']]></command>
   <inputs>
   </inputs>
   <outputs>
@@ -18,8 +19,16 @@
     </data>
   </outputs>
   <tests>
-      <test expect_failure="true">
-          <expand macro="test_result" />
+      <test>
+        <output name="output">
+            <assert_contents>
+                <has_text text="alt_org" />
+                <has_text text="test_organism" />
+                <has_text text="apollo_shared_dir/org1" />
+                <has_text text="apollo_shared_dir/org2" />
+                <has_text text="Testus" />
+            </assert_contents>
+        </output>
       </test>
   </tests>
   <help><![CDATA[