Mercurial > repos > gga > apollo_list_organism

comparison list_organisms.xml @ 10:bc2b80fc7e30 draft

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 08015be1ee8a784e0619f961aaa724857debfd6f"
author gga
date Mon, 02 Dec 2019 05:49:03 -0500
parents f26ac3b582e1
children 06254eb0cb13
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9:f26ac3b582e1 10:bc2b80fc7e30
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
9 python $__tool_directory__/list_organisms.py 9 @AUTH@
10 @ADMIN_AUTH@ 10
11 $__user_email__ 11 python '$__tool_directory__/list_organisms.py'
12 > $output]]></command> 12 '$__user_email__'
13 > '$output']]></command>
13 <inputs> 14 <inputs>
14 </inputs> 15 </inputs>
15 <outputs> 16 <outputs>
16 <data format="json" name="output"> 17 <data format="json" name="output">
17 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.txt" format="tabular" visible="true"/> 18 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.txt" format="tabular" visible="true"/>
18 </data> 19 </data>
19 </outputs> 20 </outputs>
20 <tests> 21 <tests>
21 <test expect_failure="true"> 22 <test>
22 <expand macro="test_result" /> 23 <output name="output">
24 <assert_contents>
25 <has_text text="alt_org" />
26 <has_text text="test_organism" />
27 <has_text text="apollo_shared_dir/org1" />
28 <has_text text="apollo_shared_dir/org2" />
29 <has_text text="Testus" />
30 </assert_contents>
31 </output>
23 </test> 32 </test>
24 </tests> 33 </tests>
25 <help><![CDATA[ 34 <help><![CDATA[
26 **What it does** 35 **What it does**
27 36