Mercurial > repos > gga > askomics_integrate
diff macros.xml @ 0:d2aeb7a02bb2 draft default tip
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/askomics commit f745b23c84a615bf434d717c8c0e553a012f0268
author | gga |
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date | Mon, 11 Sep 2017 05:48:41 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Mon Sep 11 05:48:41 2017 -0400 @@ -0,0 +1,84 @@ +<?xml version="1.0" encoding="UTF-8"?> + +<macros> + <!-- Requirements --> + <xml name='requirements'> + <requirements> + <requirement type='package' version='0.4.3'>askocli</requirement> + </requirements> + </xml> + + <!-- Version --> + <token name='@WRAPPER_VERSION@'>0.1</token> + + <!-- Help --> + <token name='@HELP@'><![CDATA[ + AskOmics provide a visual representation of the user abstraction as a graph. + By starting from a node of interest and iteratively selecting its neighbors, + the user creates a path on an abstraction graph. This path can then be transformed + into a SPARQL query that can be executed on the original dataset. + ]]></token> + + <!-- Citation --> + <xml name='citation'> + <citations> + <citation type='bibtex'> + @inproceedings{legeai:hal-01391080, + TITLE = {{BIPAA/Askomics, a new and easy approach for querying genomics and epigenomics elements in interaction}}, + AUTHOR = {Legeai, Fabrice and Bettembourg, Charles and Bretaudeau, Anthony and Chaussin, Yvanne and Dameron, Olivier and Tagu, Denis}, + URL = {https://hal.inria.fr/hal-01391080}, + BOOKTITLE = {{XXVth International Congress of Entomology 2016}}, + ADDRESS = {Orlando, Florida, United States}, + YEAR = {2016}, + MONTH = Sep, + KEYWORDS = {AskOmics ; Semantic Web ; RDF ; SPARQL ; data integration}, + HAL_ID = {hal-01391080}, + HAL_VERSION = {v1}, + } + </citation> + </citations> + </xml> + + <!-- AskOmics server location --> + <xml name='askomics_loc'> + <section name='loc' title='AskOmics location' expanded='False'> + <param name='url' + type='text' + label='AskOmics URL' + optional='true' + value="http://localhost:6543" + argument='-a' /> + </section> + </xml> + + <token name='@URL@'><![CDATA[$loc.url]]></token> + + <!-- Environment variables --> + <token name='@ENV_URL@'><![CDATA[\$ASKOMICS_URL]]></token> + + <!-- Authentication --> + <xml name='askomics_auth'> + <section name='auth' title='AskOmics authentication' expanded='True'> + <param name='apikey' + type='text' + label='API key' + value="xvB2YBK8pz4I96SkDN64" + argument='-k' /> + </section> + </xml> + + <token name='@APIKEY@'><![CDATA['$auth.apikey']]></token> + + <!-- Tests --> + <xml name='test_asko_loc'> + <section name='loc'> + <param name='url' value='http://example.com' /> + </section> + </xml> + <xml name='test_asko_auth'> + <section name='auth'> + <param name='apikey' value='00000000000000000000' /> + </section> + </xml> + +</macros>