Mercurial > repos > gga > askomics_integrate
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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/askomics commit f745b23c84a615bf434d717c8c0e553a012f0268
author | gga |
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date | Mon, 11 Sep 2017 05:48:41 -0400 |
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<?xml version="1.0" encoding="UTF-8"?> <macros> <!-- Requirements --> <xml name='requirements'> <requirements> <requirement type='package' version='0.4.3'>askocli</requirement> </requirements> </xml> <!-- Version --> <token name='@WRAPPER_VERSION@'>0.1</token> <!-- Help --> <token name='@HELP@'><![CDATA[ AskOmics provide a visual representation of the user abstraction as a graph. By starting from a node of interest and iteratively selecting its neighbors, the user creates a path on an abstraction graph. This path can then be transformed into a SPARQL query that can be executed on the original dataset. ]]></token> <!-- Citation --> <xml name='citation'> <citations> <citation type='bibtex'> @inproceedings{legeai:hal-01391080, TITLE = {{BIPAA/Askomics, a new and easy approach for querying genomics and epigenomics elements in interaction}}, AUTHOR = {Legeai, Fabrice and Bettembourg, Charles and Bretaudeau, Anthony and Chaussin, Yvanne and Dameron, Olivier and Tagu, Denis}, URL = {https://hal.inria.fr/hal-01391080}, BOOKTITLE = {{XXVth International Congress of Entomology 2016}}, ADDRESS = {Orlando, Florida, United States}, YEAR = {2016}, MONTH = Sep, KEYWORDS = {AskOmics ; Semantic Web ; RDF ; SPARQL ; data integration}, HAL_ID = {hal-01391080}, HAL_VERSION = {v1}, } </citation> </citations> </xml> <!-- AskOmics server location --> <xml name='askomics_loc'> <section name='loc' title='AskOmics location' expanded='False'> <param name='url' type='text' label='AskOmics URL' optional='true' value="http://localhost:6543" argument='-a' /> </section> </xml> <token name='@URL@'><![CDATA[$loc.url]]></token> <!-- Environment variables --> <token name='@ENV_URL@'><![CDATA[\$ASKOMICS_URL]]></token> <!-- Authentication --> <xml name='askomics_auth'> <section name='auth' title='AskOmics authentication' expanded='True'> <param name='apikey' type='text' label='API key' value="xvB2YBK8pz4I96SkDN64" argument='-k' /> </section> </xml> <token name='@APIKEY@'><![CDATA['$auth.apikey']]></token> <!-- Tests --> <xml name='test_asko_loc'> <section name='loc'> <param name='url' value='http://example.com' /> </section> </xml> <xml name='test_asko_auth'> <section name='auth'> <param name='apikey' value='00000000000000000000' /> </section> </xml> </macros>