Mercurial > repos > gga > askomics_integrate

annotate macros.xml @ 0:d2aeb7a02bb2 draft default tip

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/askomics commit f745b23c84a615bf434d717c8c0e553a012f0268
author gga
date Mon, 11 Sep 2017 05:48:41 -0400
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d2aeb7a02bb2 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/askomics commit f745b23c84a615bf434d717c8c0e553a012f0268
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1 <?xml version="1.0" encoding="UTF-8"?>
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2
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3 <macros>
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4 <!-- Requirements -->
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5 <xml name='requirements'>
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6 <requirements>
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7 <requirement type='package' version='0.4.3'>askocli</requirement>
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8 </requirements>
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9 </xml>
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10
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11 <!-- Version -->
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12 <token name='@WRAPPER_VERSION@'>0.1</token>
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13
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14 <!-- Help -->
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15 <token name='@HELP@'><![CDATA[
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16 AskOmics provide a visual representation of the user abstraction as a graph.
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17 By starting from a node of interest and iteratively selecting its neighbors,
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18 the user creates a path on an abstraction graph. This path can then be transformed
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19 into a SPARQL query that can be executed on the original dataset.
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20 ]]></token>
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21
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22 <!-- Citation -->
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23 <xml name='citation'>
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24 <citations>
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25 <citation type='bibtex'>
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26 @inproceedings{legeai:hal-01391080,
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27 TITLE = {{BIPAA/Askomics, a new and easy approach for querying genomics and epigenomics elements in interaction}},
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28 AUTHOR = {Legeai, Fabrice and Bettembourg, Charles and Bretaudeau, Anthony and Chaussin, Yvanne and Dameron, Olivier and Tagu, Denis},
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29 URL = {https://hal.inria.fr/hal-01391080},
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30 BOOKTITLE = {{XXVth International Congress of Entomology 2016}},
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31 ADDRESS = {Orlando, Florida, United States},
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32 YEAR = {2016},
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33 MONTH = Sep,
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34 KEYWORDS = {AskOmics ; Semantic Web ; RDF ; SPARQL ; data integration},
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35 HAL_ID = {hal-01391080},
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36 HAL_VERSION = {v1},
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37 }
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38 </citation>
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39 </citations>
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40 </xml>
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41
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42 <!-- AskOmics server location -->
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43 <xml name='askomics_loc'>
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44 <section name='loc' title='AskOmics location' expanded='False'>
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45 <param name='url'
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46 type='text'
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47 label='AskOmics URL'
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48 optional='true'
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49 value="http://localhost:6543"
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50 argument='-a' />
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51 </section>
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52 </xml>
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53
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54 <token name='@URL@'><![CDATA[$loc.url]]></token>
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55
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56 <!-- Environment variables -->
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57 <token name='@ENV_URL@'><![CDATA[\$ASKOMICS_URL]]></token>
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58
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59 <!-- Authentication -->
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60 <xml name='askomics_auth'>
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61 <section name='auth' title='AskOmics authentication' expanded='True'>
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62 <param name='apikey'
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63 type='text'
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64 label='API key'
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65 value="xvB2YBK8pz4I96SkDN64"
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66 argument='-k' />
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67 </section>
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68 </xml>
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69
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70 <token name='@APIKEY@'><![CDATA['$auth.apikey']]></token>
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71
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72 <!-- Tests -->
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73 <xml name='test_asko_loc'>
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74 <section name='loc'>
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75 <param name='url' value='http://example.com' />
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76 </section>
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77 </xml>
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78 <xml name='test_asko_auth'>
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79 <section name='auth'>
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80 <param name='apikey' value='00000000000000000000' />
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81 </section>
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82 </xml>
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83
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84 </macros>