Mercurial > repos > gga > chado_export_export_gbk

annotate export_export_gbk.xml @ 12:62e255e48ddb draft

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 1640878827bdc3870b6f34eded3a3f7571a1849f"
author gga
date Wed, 21 Aug 2019 05:11:19 -0400
parents abfe34f63772
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3ec83754aaef planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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1 <?xml version="1.0"?>
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62e255e48ddb "planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 1640878827bdc3870b6f34eded3a3f7571a1849f"
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2 <tool id="export_export_gbk" name="Chado export gbk" version="@WRAPPER_VERSION@">
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db753046224c planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
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3 <description></description>
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4 <macros>
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5 <import>macros.xml</import>
db753046224c planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
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6 </macros>
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7 <expand macro="requirements"/>
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3ec83754aaef planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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8 <code file="chado.py"/>
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9 <command detect_errors="aggressive"><![CDATA[
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10 @START_PSQL@ &&
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3ec83754aaef planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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3ec83754aaef planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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12 chakin export export_gbk
3ec83754aaef planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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13 '$organism'
3ec83754aaef planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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15 > '$results'
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3ec83754aaef planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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17 @STOP_PSQL@
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18 ]]></command>
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19 <inputs>
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20 <expand macro="psql_target"/>
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21 <!-- arguments -->
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22 <param argument="--organism"
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23 type="select"
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24 dynamic_options="list_organisms()"
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25 label="Organism" />
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26
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27 <!-- options -->
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28 <expand macro="wait_for"/>
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29
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30 </inputs>
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31 <outputs>
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32 <data format="genbank" name="results"/>
db753046224c planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
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33 </outputs>
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34 <help>
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35 Export organism features as genbank
3ec83754aaef planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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3ec83754aaef planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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37 @HELP@
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38 </help>
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39 </tool>