Mercurial > repos > gga > chado_expression_add_expression

diff expression_add_expression.xml @ 0:c09e35ef9d09 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
author gga
date Mon, 05 Nov 2018 08:04:56 -0500
parents
children 4f42edf27351
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/expression_add_expression.xml	Mon Nov 05 08:04:56 2018 -0500
@@ -0,0 +1,35 @@
+<?xml version="1.0"?>
+<tool id="expression_add_expression" name="Chado expression add" version="@WRAPPER_VERSION@.0">
+ <description></description>
+	<macros>
+		<import>macros.xml</import>
+	</macros>
+	<expand macro="requirements"/>
+    <code file="chado.py"/>
+	<command detect_errors="aggressive"><![CDATA[
+@AUTH@
+
+chakin expression add_expression
+'$organism_id'
+'$analysis_id'
+'$file_path'
+
+ > $results
+    ]]></command>
+	<inputs>
+	    <!-- arguments -->
+		<param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" />
+		<param argument="analysis_id" type="select" dynamic_options="list_analyses()"  label="Analysis" />
+		<param name="file_path" label="Expression matrix" argument="file_path" type="data" format="tabular" help="Tabular file where columns are experimental conditions, and rows are features" />
+
+		<expand macro="wait_for"/>
+	</inputs>
+	<outputs>
+		<data format="txt" name="results"/>
+	</outputs>
+	<help>
+Add an expression matrix file to the database
+
+@HELP@
+	</help>
+</tool>