Mercurial > repos > gga > chado_feature_get_features

annotate feature_get_features.xml @ 7:d3ffd510c98a draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author gga
date Fri, 23 Nov 2018 11:16:40 -0500
parents 1494f2f25439
children 51f5137232ff
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1 <?xml version="1.0"?>
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2 <tool id="feature_get_features" name="Chado features get" version="@WRAPPER_VERSION@.0">
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3 <description></description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <code file="chado.py"/>
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9 <command detect_errors="aggressive"><![CDATA[
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10 @AUTH@
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11
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12 chakin feature get_features
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14 #if $organism:
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15 --organism_id '$organism'
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16 #end if
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17 #if $analysis_id:
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18 --analysis_id '$analysis_id'
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19 #end if
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20 #if $name:
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21 --name '$name'
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22 #end if
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23 #if $uniquename:
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24 --uniquename '$uniquename'
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25 #end if
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27 | jq -S . > $results
1494f2f25439 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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28 ]]></command>
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29 <inputs>
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30 <!-- options -->
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31 <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" />
d3ffd510c98a planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
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32 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" />
d3ffd510c98a planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
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33 <param name="name" label="Name" argument="--name" type="text" help="name filter" />
d3ffd510c98a planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
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34 <param name="uniquename" label="Uniquename" argument="--uniquename" type="text" help="uniquename filter" />
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35
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36 </inputs>
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37 <outputs>
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38 <data format="json" name="results"/>
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39 </outputs>
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40 <help>
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41 Get all or some features
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43 @HELP@
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44 </help>
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45 </tool>