Mercurial > repos > gga > chado_feature_get_features
comparison feature_get_features.xml @ 0:1494f2f25439 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
| author | gga |
|---|---|
| date | Thu, 21 Jun 2018 08:46:03 -0400 |
| parents | |
| children | d3ffd510c98a |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:1494f2f25439 |
|---|---|
| 1 <?xml version="1.0"?> | |
| 2 <tool id="feature_get_features" name="Chado features get" version="@WRAPPER_VERSION@.0"> | |
| 3 <description></description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements"/> | |
| 8 <code file="chado.py"/> | |
| 9 <command detect_errors="aggressive"><![CDATA[ | |
| 10 @AUTH@ | |
| 11 | |
| 12 chakin feature get_features | |
| 13 | |
| 14 #if $organism: | |
| 15 --organism_id '$organism' | |
| 16 #end if | |
| 17 #if $analysis_id: | |
| 18 --analysis_id '$analysis_id' | |
| 19 #end if | |
| 20 #if $name: | |
| 21 --name '$name' | |
| 22 #end if | |
| 23 #if $uniquename: | |
| 24 --uniquename '$uniquename' | |
| 25 #end if | |
| 26 | |
| 27 | jq -S . > $results | |
| 28 ]]></command> | |
| 29 <inputs> | |
| 30 <!-- arguments --> | |
| 31 | |
| 32 <!-- options --> | |
| 33 <param argument="--organism" | |
| 34 type="select" | |
| 35 dynamic_options="list_organisms()" | |
| 36 label="Organism" /> | |
| 37 <param argument="--analysis_id" | |
| 38 type="select" | |
| 39 dynamic_options="list_analyses()" | |
| 40 label="Analysis" /> | |
| 41 <param name="name" label="Name" argument="name" type="text" help="name filter" /> | |
| 42 <param name="uniquename" label="Uniquename" argument="uniquename" type="text" help="uniquename filter" /> | |
| 43 | |
| 44 </inputs> | |
| 45 <outputs> | |
| 46 <data format="json" name="results"/> | |
| 47 </outputs> | |
| 48 <help> | |
| 49 Get all or some features | |
| 50 | |
| 51 @HELP@ | |
| 52 </help> | |
| 53 </tool> |