Mercurial > repos > gga > chado_organism_add_organism
comparison organism_add_organism.xml @ 0:51ac1ffb4f38 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author | gga |
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date | Thu, 21 Jun 2018 08:44:11 -0400 |
parents | |
children | 5d566012d85f |
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-1:000000000000 | 0:51ac1ffb4f38 |
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1 <?xml version="1.0"?> | |
2 <tool id="organism_add_organism" name="Chado organism add" version="@WRAPPER_VERSION@.0"> | |
3 <description></description> | |
4 <macros> | |
5 <import>macros.xml</import> | |
6 </macros> | |
7 <expand macro="requirements"/> | |
8 <command detect_errors="aggressive"><![CDATA[ | |
9 @AUTH@ | |
10 | |
11 chakin organism add_organism | |
12 '$genus' | |
13 '$common' | |
14 '$abbr' | |
15 | |
16 #if $species: | |
17 --species '$species' | |
18 #end if | |
19 #if $comment: | |
20 --comment '$comment' | |
21 #end if | |
22 | |
23 | jq -S . > $results | |
24 ]]></command> | |
25 <inputs> | |
26 <!-- arguments --> | |
27 <param name="genus" label="Genus" argument="genus" type="text" help="The genus of the organism" /> | |
28 <param name="species" label="Species" argument="species" type="text" help="The species of the organism" /> | |
29 <param name="common" label="Common" argument="common" type="text" help="The common name of the organism" /> | |
30 <param name="abbr" label="Abbr" argument="abbr" type="text" help="The abbreviation of the organism" /> | |
31 | |
32 <!-- options --> | |
33 <param name="comment" label="Comment" argument="comment" type="text" help="A comment / description" /> | |
34 | |
35 </inputs> | |
36 <outputs> | |
37 <data format="json" name="results"/> | |
38 </outputs> | |
39 <help> | |
40 Add a new organism to the Chado database | |
41 | |
42 @HELP@ | |
43 </help> | |
44 </tool> |