Mercurial > repos > gga > chado_organism_add_organism
view organism_add_organism.xml @ 0:51ac1ffb4f38 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author | gga |
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date | Thu, 21 Jun 2018 08:44:11 -0400 |
parents | |
children | 5d566012d85f |
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<?xml version="1.0"?> <tool id="organism_add_organism" name="Chado organism add" version="@WRAPPER_VERSION@.0"> <description></description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[ @AUTH@ chakin organism add_organism '$genus' '$common' '$abbr' #if $species: --species '$species' #end if #if $comment: --comment '$comment' #end if | jq -S . > $results ]]></command> <inputs> <!-- arguments --> <param name="genus" label="Genus" argument="genus" type="text" help="The genus of the organism" /> <param name="species" label="Species" argument="species" type="text" help="The species of the organism" /> <param name="common" label="Common" argument="common" type="text" help="The common name of the organism" /> <param name="abbr" label="Abbr" argument="abbr" type="text" help="The abbreviation of the organism" /> <!-- options --> <param name="comment" label="Comment" argument="comment" type="text" help="A comment / description" /> </inputs> <outputs> <data format="json" name="results"/> </outputs> <help> Add a new organism to the Chado database @HELP@ </help> </tool>