view organism_delete_all_organisms.xml @ 12:6db3135cf337 draft

"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 1640878827bdc3870b6f34eded3a3f7571a1849f"
author gga
date Wed, 21 Aug 2019 05:09:59 -0400
parents 497a82f6a337
children
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<?xml version="1.0"?>
<tool id="organism_delete_all_organisms" name="Chado delete all organisms" version="@WRAPPER_VERSION@">
    <description></description>
	<macros>
		<import>macros.xml</import>
	</macros>
	<expand macro="requirements"/>
	<command detect_errors="aggressive"><![CDATA[
@START_PSQL@ &&

chakin organism delete_all_organisms

#if $confirm:
  $confirm
#end if

 > '$results'

@ZIP_PSQL@
    ]]></command>
	<inputs>
  		<expand macro="psql_target"/>
	    <!-- arguments -->

	    <!-- options -->
			<param name="confirm" label="Confirm" argument="--confirm" type="boolean" truevalue="--confirm" falsevalue="" help="Confirm that you really do want to delete ALL of the organisms." />

	</inputs>
	<outputs>
		<data format="txt" name="results"/>
    <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
			<filter>psql_target['method'] == "pgtools"</filter>
		</data>
	</outputs>
	<help>
Delete all organisms

@HELP@
	</help>
</tool>