Mercurial > repos > gga > chado_organism_delete_all_organisms

annotate organism_delete_all_organisms.xml @ 12:6db3135cf337 draft

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 1640878827bdc3870b6f34eded3a3f7571a1849f"
author gga
date Wed, 21 Aug 2019 05:09:59 -0400
parents 497a82f6a337
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eabcd2a28184 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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1 <?xml version="1.0"?>
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6db3135cf337 "planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 1640878827bdc3870b6f34eded3a3f7571a1849f"
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2 <tool id="organism_delete_all_organisms" name="Chado delete all organisms" version="@WRAPPER_VERSION@">
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3 <description></description>
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4 <macros>
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5 <import>macros.xml</import>
eabcd2a28184 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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6 </macros>
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7 <expand macro="requirements"/>
eabcd2a28184 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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8 <command detect_errors="aggressive"><![CDATA[
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9 @START_PSQL@ &&
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eabcd2a28184 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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11 chakin organism delete_all_organisms
eabcd2a28184 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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eabcd2a28184 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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13 #if $confirm:
eabcd2a28184 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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14 $confirm
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15 #end if
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17 > '$results'
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19 @ZIP_PSQL@
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20 ]]></command>
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21 <inputs>
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22 <expand macro="psql_target"/>
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23 <!-- arguments -->
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24
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25 <!-- options -->
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26 <param name="confirm" label="Confirm" argument="--confirm" type="boolean" truevalue="--confirm" falsevalue="" help="Confirm that you really do want to delete ALL of the organisms." />
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eabcd2a28184 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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28 </inputs>
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29 <outputs>
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30 <data format="txt" name="results"/>
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31 <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
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32 <filter>psql_target['method'] == "pgtools"</filter>
0e5b44c358d1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
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33 </data>
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34 </outputs>
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35 <help>
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36 Delete all organisms
eabcd2a28184 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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eabcd2a28184 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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38 @HELP@
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39 </help>
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40 </tool>