Mercurial > repos > gga > chado_organism_get_organisms

comparison organism_get_organisms.xml @ 10:d404c87b322c draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:38:19 -0400
parents a3e4a405189e
children 75818f023ff4
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9:a3e4a405189e 10:d404c87b322c
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
9 @AUTH@ 9 @START_PSQL@ &&
10 10
11 chakin organism get_organisms 11 chakin organism get_organisms
12 12
13 #if $organism_id: 13 #if $organism_id:
14 --organism_id '$organism_id' 14 --organism_id '$organism_id'
28 #if $comment: 28 #if $comment:
29 --comment '$comment' 29 --comment '$comment'
30 #end if 30 #end if
31 31
32 | jq -S . > '$results' 32 | jq -S . > '$results'
33
34 && @STOP_PSQL@
33 ]]></command> 35 ]]></command>
34 <inputs> 36 <inputs>
37 <expand macro="psql_target"/>
35 <!-- arguments --> 38 <!-- arguments -->
36 39
37 <!-- options --> 40 <!-- options -->
38 <param name="organism_id" label="Organism Id" argument="--organism_id" type="integer" help="organism_id filter" optional="True" /> 41 <param name="organism_id" label="Organism Id" argument="--organism_id" type="integer" help="organism_id filter" optional="True" />
39 <param name="genus" label="Genus" argument="--genus" type="text" help="genus filter" optional="True" /> 42 <param name="genus" label="Genus" argument="--genus" type="text" help="genus filter" optional="True" />