Mercurial > repos > gga > chado_phylogeny_gene_order

annotate phylogeny_gene_order.xml @ 3:ff92bfcce52c draft

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author gga
date Fri, 03 Aug 2018 04:33:33 -0400
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children 9bd557c70bcb
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1 <?xml version="1.0"?>
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2 <tool id="phylogeny_gene_order" name="Chado gene ordering" version="@WRAPPER_VERSION@.0">
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3 <description>for phylogeny module</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <command detect_errors="aggressive"><![CDATA[
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9 @AUTH@
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10
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11 chakin phylogeny gene_order
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12
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13 #if $nuke:
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14 $nuke
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15 #end if
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16
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17 > $results
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18 ]]></command>
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19 <inputs>
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20 <!-- options -->
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21 <param name="nuke" label="Nuke" argument="nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene ordering data" />
4854abe5473b planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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22 <expand macro="wait_for"/>
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24 </inputs>
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25 <outputs>
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26 <data format="txt" name="results"/>
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27 </outputs>
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28 <help>
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29 Orders all the genes in the database by their order on their respective chromosomes in the gene_order table (for use in https://github.com/legumeinfo/lis_context_viewer/).
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30
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31 @HELP@
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32 </help>
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33 </tool>