Mercurial > repos > gga > chado_phylogeny_gene_order
diff phylogeny_gene_order.xml @ 0:4854abe5473b draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author | gga |
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date | Thu, 21 Jun 2018 08:41:53 -0400 |
parents | |
children | 9bd557c70bcb |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/phylogeny_gene_order.xml Thu Jun 21 08:41:53 2018 -0400 @@ -0,0 +1,33 @@ +<?xml version="1.0"?> +<tool id="phylogeny_gene_order" name="Chado gene ordering" version="@WRAPPER_VERSION@.0"> + <description>for phylogeny module</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <command detect_errors="aggressive"><![CDATA[ +@AUTH@ + +chakin phylogeny gene_order + +#if $nuke: + $nuke +#end if + + > $results + ]]></command> + <inputs> + <!-- options --> + <param name="nuke" label="Nuke" argument="nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene ordering data" /> + <expand macro="wait_for"/> + + </inputs> + <outputs> + <data format="txt" name="results"/> + </outputs> + <help> +Orders all the genes in the database by their order on their respective chromosomes in the gene_order table (for use in https://github.com/legumeinfo/lis_context_viewer/). + +@HELP@ + </help> +</tool>