Mercurial > repos > gga > chado_phylogeny_gene_order
comparison phylogeny_gene_order.xml @ 0:4854abe5473b draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
| author | gga |
|---|---|
| date | Thu, 21 Jun 2018 08:41:53 -0400 |
| parents | |
| children | 9bd557c70bcb |
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| -1:000000000000 | 0:4854abe5473b |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="phylogeny_gene_order" name="Chado gene ordering" version="@WRAPPER_VERSION@.0"> | |
| 3 <description>for phylogeny module</description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements"/> | |
| 8 <command detect_errors="aggressive"><![CDATA[ | |
| 9 @AUTH@ | |
| 10 | |
| 11 chakin phylogeny gene_order | |
| 12 | |
| 13 #if $nuke: | |
| 14 $nuke | |
| 15 #end if | |
| 16 | |
| 17 > $results | |
| 18 ]]></command> | |
| 19 <inputs> | |
| 20 <!-- options --> | |
| 21 <param name="nuke" label="Nuke" argument="nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene ordering data" /> | |
| 22 <expand macro="wait_for"/> | |
| 23 | |
| 24 </inputs> | |
| 25 <outputs> | |
| 26 <data format="txt" name="results"/> | |
| 27 </outputs> | |
| 28 <help> | |
| 29 Orders all the genes in the database by their order on their respective chromosomes in the gene_order table (for use in https://github.com/legumeinfo/lis_context_viewer/). | |
| 30 | |
| 31 @HELP@ | |
| 32 </help> | |
| 33 </tool> |