Mercurial > repos > gga > jbrowse_to_container
comparison jbrowse_to_container.py @ 0:11033bdad2ca draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
| author | gga |
|---|---|
| date | Mon, 11 Sep 2017 05:49:16 -0400 |
| parents | |
| children | 4065bcff8e85 |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:11033bdad2ca |
|---|---|
| 1 #!/usr/bin/env python | |
| 2 from __future__ import print_function | |
| 3 | |
| 4 import argparse | |
| 5 import base64 | |
| 6 | |
| 7 | |
| 8 if __name__ == '__main__': | |
| 9 parser = argparse.ArgumentParser(description='Generates an iframe to access a jbrowse instance') | |
| 10 parser.add_argument('external_jbrowse_url', help='Jbrowse full URL') | |
| 11 | |
| 12 args = parser.parse_args() | |
| 13 | |
| 14 # This is base64 encoded to get past the toolshed's filters. | |
| 15 HTML_TPL = """ | |
| 16 PGh0bWw+PGhlYWQ+PHRpdGxlPkVtYmVkZGVkIEpCcm93c2UgQWNjZXNzPC90aXRsZT48c3R5bGUg | |
| 17 dHlwZT0idGV4dC9jc3MiPmJvZHkge3ttYXJnaW46IDA7fX0gaWZyYW1lIHt7Ym9yZGVyOiAwO3dp | |
| 18 ZHRoOiAxMDAlO2hlaWdodDogMTAwJX19PC9zdHlsZT48L2hlYWQ+PGJvZHk+PGlmcmFtZSBzcmM9 | |
| 19 IntiYXNlX3VybH0iPjwvaWZyYW1lPjwvYm9keT48L2h0bWw+DQo= | |
| 20 """ | |
| 21 HTML_TPL = base64.b64decode(HTML_TPL.replace('\n', '')) | |
| 22 | |
| 23 print(HTML_TPL.format(base_url=args.external_jbrowse_url)) |