Mercurial > repos > gga > jbrowse_to_container
view jbrowse_to_container.py @ 1:4065bcff8e85 draft default tip
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit 3500c1e606a902b492180db3e2e0c2ee07c90e8b"
author | gga |
---|---|
date | Tue, 27 Apr 2021 12:49:22 +0000 (2021-04-27) |
parents | 11033bdad2ca |
children |
line wrap: on
line source
#!/usr/bin/env python import argparse import base64 if __name__ == '__main__': parser = argparse.ArgumentParser(description='Generates an iframe to access a jbrowse instance') parser.add_argument('external_jbrowse_url', help='Jbrowse full URL') args = parser.parse_args() # This is base64 encoded to get past the toolshed's filters. HTML_TPL = """ PGh0bWw+PGhlYWQ+PHRpdGxlPkVtYmVkZGVkIEpCcm93c2UgQWNjZXNzPC90aXRsZT48c3R5bGUg dHlwZT0idGV4dC9jc3MiPmJvZHkge3ttYXJnaW46IDA7fX0gaWZyYW1lIHt7Ym9yZGVyOiAwO3dp ZHRoOiAxMDAlO2hlaWdodDogMTAwJX19PC9zdHlsZT48L2hlYWQ+PGJvZHk+PGlmcmFtZSBzcmM9 IntiYXNlX3VybH0iPjwvaWZyYW1lPjwvYm9keT48L2h0bWw+DQo= """ HTML_TPL = base64.b64decode(HTML_TPL.replace('\n', '')) print(HTML_TPL.decode('ascii').format(base_url=args.external_jbrowse_url))