Mercurial > repos > gga > jbrowse_to_container

diff jbrowse_to_container.py @ 0:11033bdad2ca draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
author gga
date Mon, 11 Sep 2017 05:49:16 -0400 (2017-09-11)
parents
children 4065bcff8e85
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/jbrowse_to_container.py	Mon Sep 11 05:49:16 2017 -0400
@@ -0,0 +1,23 @@
+#!/usr/bin/env python
+from __future__ import print_function
+
+import argparse
+import base64
+
+
+if __name__ == '__main__':
+    parser = argparse.ArgumentParser(description='Generates an iframe to access a jbrowse instance')
+    parser.add_argument('external_jbrowse_url', help='Jbrowse full URL')
+
+    args = parser.parse_args()
+
+    # This is base64 encoded to get past the toolshed's filters.
+    HTML_TPL = """
+    PGh0bWw+PGhlYWQ+PHRpdGxlPkVtYmVkZGVkIEpCcm93c2UgQWNjZXNzPC90aXRsZT48c3R5bGUg
+    dHlwZT0idGV4dC9jc3MiPmJvZHkge3ttYXJnaW46IDA7fX0gaWZyYW1lIHt7Ym9yZGVyOiAwO3dp
+    ZHRoOiAxMDAlO2hlaWdodDogMTAwJX19PC9zdHlsZT48L2hlYWQ+PGJvZHk+PGlmcmFtZSBzcmM9
+    IntiYXNlX3VybH0iPjwvaWZyYW1lPjwvYm9keT48L2h0bWw+DQo=
+    """
+    HTML_TPL = base64.b64decode(HTML_TPL.replace('\n', ''))
+
+print(HTML_TPL.format(base_url=args.external_jbrowse_url))