Mercurial > repos > gga > tripal_analysis_add_analysis

annotate analysis_add_analysis.xml @ 0:f8dab3351d1b draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
author gga
date Mon, 11 Sep 2017 05:49:35 -0400
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f8dab3351d1b planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
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1 <?xml version="1.0"?>
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2 <tool id="analysis_add_analysis" profile="16.04" name="Create an analysis" version="@WRAPPER_VERSION@.0">
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3 <description>in Tripal</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements">
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8 <requirement type="package" version="1.5">jq</requirement>
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9 </expand>
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10 <expand macro="stdio"/>
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11 <command><![CDATA[
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12
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13 @AUTH@
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14
f8dab3351d1b planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
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15 tripaille analysis add_analysis
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16
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17 @ANALYSIS@
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18
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19 | jq -S . > $results
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20 ]]></command>
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21 <inputs>
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22 <expand macro="analysis" />
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23 </inputs>
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24 <outputs>
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25 <data format="json" name="results" label="New Tripal analysis" />
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26 </outputs>
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27 <tests>
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28 <test expect_failure="true">
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29 <section name="analysis">
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30 <param name="name" value="Some analysis" />
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31 <param name="program" value="blastp" />
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32 <param name="program_version" value="2.5.0" />
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33 <param name="algorithm" value="blast" />
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34 <param name="source" value="NCBI" />
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35 <param name="source_version" value="1.0" />
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36 <param name="source_uri" value="http://ncbi.com/somewhere" />
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37 <param name="description" value="My cool new test analysis" />
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38 <param name="date" value="2016-12-12" />
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39 </section>
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40
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41 <expand macro="test_result" />
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42 </test>
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43 </tests>
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44 <help><![CDATA[
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45 @HELP_OVERVIEW@
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46
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47 **Create Analysis**
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48
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49 With this tool, you can create a new analysis in the Tripal/Chado database.
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50
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51 Keep in mind that you cannot add multiple analysis with the same program, program version and source.
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52
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53 @HELP@
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54 ]]></help>
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55 <expand macro="citation"/>
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56 </tool>