Mercurial > repos > glogobyte > mirviz
changeset 12:847318ed9a5c draft
Uploaded
author | glogobyte |
---|---|
date | Wed, 20 Oct 2021 15:17:24 +0000 |
parents | 0a4d6c483ff0 |
children | 3ba53d80714b |
files | viz.py |
diffstat | 1 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/viz.py Wed Oct 20 14:45:41 2021 +0000 +++ b/viz.py Wed Oct 20 15:17:24 2021 +0000 @@ -8,13 +8,13 @@ starttime = time.time() parser = argparse.ArgumentParser() -parser.add_argument("-in", "--input", help="choose type of analysis", action="store") -parser.add_argument("-p_value", "--pval", help="choose type of analysis", action="store") -parser.add_argument("-fc", "--log2fc", help="choose type of analysis", action="store") -parser.add_argument("-top", "--top_mirnas", help="choose type of analysis", action="store") +parser.add_argument("-in", "--input", help="input file from Deseq2 or EdgeR", action="store") +parser.add_argument("-p_value", "--pval", help="p-value or p-adj threshold", action="store") +parser.add_argument("-fc", "--log2fc", help="log2fc threshold", action="store") +parser.add_argument("-top", "--top_mirnas", help="Top significant genes", action="store") parser.add_argument("-tool_dir", "--tool_directory", help="tool directory path", action="store") -parser.add_argument("-statistic", "--stat", help="tool directory path", action="store") -parser.add_argument("-diff_tool", "--tool", help="tool directory path", action="store") +parser.add_argument("-statistic", "--stat", help="Filter option by p-value or p-adj or basemean (only for Deseq2)", action="store") +parser.add_argument("-diff_tool", "--tool", help="Choose tool for Differential expression Deseq2 or EdgeR", action="store") args = parser.parse_args()