Mercurial > repos > goeckslab > image_learner

annotate utils.py @ 1:39202fe5cf97 draft

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planemo upload for repository https://github.com/goeckslab/gleam.git commit 06c0da44ac93256dfb616a6b40276b5485a71e8e
author goeckslab
date Wed, 02 Jul 2025 18:59:10 +0000
parents 54b871dfc51e
children 186424a7eca7
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54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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diff changeset
1 import base64
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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2 import json
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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3
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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4
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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5 def get_html_template():
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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6 return """
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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7 <html>
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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8 <head>
1
39202fe5cf97 planemo upload for repository https://github.com/goeckslab/gleam.git commit 06c0da44ac93256dfb616a6b40276b5485a71e8e
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9 <meta charset="UTF-8">
0
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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10 <title>Galaxy-Ludwig Report</title>
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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11 <style>
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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12 body {
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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13 font-family: Arial, sans-serif;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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14 margin: 0;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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15 padding: 20px;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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16 background-color: #f4f4f4;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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17 }
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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18 .container {
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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19 max-width: 800px;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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20 margin: auto;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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21 background: white;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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22 padding: 20px;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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23 box-shadow: 0 0 10px rgba(0, 0, 0, 0.1);
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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24 overflow-x: auto;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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25 }
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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26 h1 {
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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27 text-align: center;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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28 color: #333;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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29 }
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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30 h2 {
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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31 border-bottom: 2px solid #4CAF50;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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32 color: #4CAF50;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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33 padding-bottom: 5px;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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34 }
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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35 table {
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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36 border-collapse: collapse;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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37 margin: 20px 0;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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38 width: 100%;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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39 table-layout: fixed; /* Enforces consistent column widths */
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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40 }
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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41 table, th, td {
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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42 border: 1px solid #ddd;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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43 }
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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44 th, td {
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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45 padding: 8px;
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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46 text-align: center; /* Center-align text */
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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47 vertical-align: middle; /* Center-align content vertically */
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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48 word-wrap: break-word; /* Break long words to avoid overflow */
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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49 }
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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50 th:first-child, td:first-child {
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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51 width: 5%; /* Smaller width for the first column */
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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52 }
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53 th:nth-child(2), td:nth-child(2) {
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54 width: 50%; /* Wider for the metric/description column */
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55 }
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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56 th:last-child, td:last-child {
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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57 width: 25%; /* Value column gets remaining space */
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58 }
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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59 th {
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60 background-color: #4CAF50;
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61 color: white;
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62 }
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63 .plot {
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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64 text-align: center;
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65 margin: 20px 0;
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66 }
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67 .plot img {
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68 max-width: 100%;
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69 height: auto;
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70 }
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71 </style>
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72 </head>
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73 <body>
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74 <div class="container">
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75 """
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76
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77
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78 def get_html_closing():
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79 return """
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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80 </div>
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81 </body>
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82 </html>
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83 """
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84
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85
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86 def encode_image_to_base64(image_path):
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87 """Convert an image file to a base64 encoded string."""
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88 with open(image_path, "rb") as img_file:
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89 return base64.b64encode(img_file.read()).decode("utf-8")
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90
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91
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92 def json_to_nested_html_table(json_data, depth=0):
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93 """
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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94 Convert JSON object to an HTML nested table.
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95
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96 Parameters:
54b871dfc51e planemo upload for repository https://github.com/goeckslab/gleam.git commit b7411ff35b6228ccdfd36cd4ebd946c03ac7f7e9
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97 json_data (dict or list): The JSON data to convert.
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98 depth (int): Current depth level for indentation.
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99
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100 Returns:
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101 str: HTML string for the nested table.
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102 """
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103 # Base case: if JSON is a simple key-value pair dictionary
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104 if isinstance(json_data, dict) and all(
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105 not isinstance(v, (dict, list)) for v in json_data.values()
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106 ):
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107 # Render a flat table
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108 rows = [
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109 f"<tr><th>{key}</th><td>{value}</td></tr>"
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110 for key, value in json_data.items()
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111 ]
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112 return f"<table>{''.join(rows)}</table>"
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113
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114 # Base case: if JSON is a list of simple values
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115 if isinstance(json_data, list) and all(
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116 not isinstance(v, (dict, list)) for v in json_data
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117 ):
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118 rows = [
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119 f"<tr><th>Index {i}</th><td>{value}</td></tr>"
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120 for i, value in enumerate(json_data)
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121 ]
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122 return f"<table>{''.join(rows)}</table>"
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123
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124 # Recursive case: if JSON contains nested structures
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125 if isinstance(json_data, dict):
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126 rows = [
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127 f"<tr><th style='padding-left:{depth * 20}px;'>{key}</th>"
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128 f"<td>{json_to_nested_html_table(value, depth + 1)}</td></tr>"
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129 for key, value in json_data.items()
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130 ]
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131 return f"<table>{''.join(rows)}</table>"
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132
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133 if isinstance(json_data, list):
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134 rows = [
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135 f"<tr><th style='padding-left:{depth * 20}px;'>[{i}]</th>"
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136 f"<td>{json_to_nested_html_table(value, depth + 1)}</td></tr>"
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137 for i, value in enumerate(json_data)
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138 ]
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139 return f"<table>{''.join(rows)}</table>"
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140
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141 # Base case: simple value
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142 return f"{json_data}"
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143
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144
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145 def json_to_html_table(json_data):
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146 """
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147 Convert JSON to a vertically oriented HTML table.
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148
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149 Parameters:
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150 json_data (str or dict): JSON string or dictionary.
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151
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152 Returns:
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153 str: HTML table representation.
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154 """
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155 if isinstance(json_data, str):
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156 json_data = json.loads(json_data)
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157 return json_to_nested_html_table(json_data)