image_learner: ludwig_backend.py annotate

author	goeckslab
date	Fri, 21 Nov 2025 15:58:13 +0000
parents
children

rev	line source
12 bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	1 import json
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	2 import logging
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	3 from pathlib import Path
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	4 from typing import Any, Dict, Optional, Protocol, Tuple
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	5
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	6 import pandas as pd
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	7 import pandas.api.types as ptypes
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	8 import yaml
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	9 from constants import (
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	10 IMAGE_PATH_COLUMN_NAME,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	11 LABEL_COLUMN_NAME,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	12 MODEL_ENCODER_TEMPLATES,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	13 SPLIT_COLUMN_NAME,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	14 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	15 from html_structure import (
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	16 build_tabbed_html,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	17 encode_image_to_base64,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	18 format_config_table_html,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	19 format_stats_table_html,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	20 format_test_merged_stats_table_html,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	21 format_train_val_stats_table_html,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	22 get_html_closing,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	23 get_html_template,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	24 get_metrics_help_modal,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	25 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	26 from ludwig.globals import (
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	27 DESCRIPTION_FILE_NAME,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	28 PREDICTIONS_PARQUET_FILE_NAME,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	29 TEST_STATISTICS_FILE_NAME,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	30 TRAIN_SET_METADATA_FILE_NAME,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	31 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	32 from ludwig.utils.data_utils import get_split_path
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	33 from metaformer_setup import get_visualizations_registry, META_DEFAULT_CFGS
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	34 from plotly_plots import build_classification_plots
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	35 from utils import detect_output_type, extract_metrics_from_json
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	36
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	37 logger = logging.getLogger("ImageLearner")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	38
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	39
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	40 class Backend(Protocol):
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	41 """Interface for a machine learning backend."""
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	42
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	43 def prepare_config(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	44 self,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	45 config_params: Dict[str, Any],
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	46 split_config: Dict[str, Any],
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	47 ) -> str:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	48 ...
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	49
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	50 def run_experiment(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	51 self,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	52 dataset_path: Path,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	53 config_path: Path,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	54 output_dir: Path,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	55 random_seed: int,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	56 ) -> None:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	57 ...
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	58
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	59 def generate_plots(self, output_dir: Path) -> None:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	60 ...
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	61
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	62 def generate_html_report(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	63 self,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	64 title: str,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	65 output_dir: str,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	66 config: Dict[str, Any],
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	67 split_info: str,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	68 ) -> Path:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	69 ...
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	70
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	71
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	72 class LudwigDirectBackend:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	73 """Backend for running Ludwig experiments directly via the internal experiment_cli function."""
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	74
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	75 def _detect_image_dimensions(self, image_zip_path: str) -> Tuple[int, int]:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	76 """Detect image dimensions from the first image in the dataset."""
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	77 try:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	78 import zipfile
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	79 from PIL import Image
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	80 import io
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	81
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	82 # Check if image_zip is provided
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	83 if not image_zip_path:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	84 logger.warning("No image zip provided, using default 224x224")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	85 return 224, 224
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	86
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	87 # Extract first image to detect dimensions
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	88 with zipfile.ZipFile(image_zip_path, 'r') as z:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	89 image_files = [f for f in z.namelist() if f.lower().endswith(('.png', '.jpg', '.jpeg'))]
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	90 if not image_files:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	91 logger.warning("No image files found in zip, using default 224x224")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	92 return 224, 224
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	93
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	94 # Check first image
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	95 with z.open(image_files[0]) as f:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	96 img = Image.open(io.BytesIO(f.read()))
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	97 width, height = img.size
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	98 logger.info(f"Detected image dimensions: {width}x{height}")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	99 return height, width # Return as (height, width) to match encoder config
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	100
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	101 except Exception as e:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	102 logger.warning(f"Error detecting image dimensions: {e}, using default 224x224")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	103 return 224, 224
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	104
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	105 def prepare_config(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	106 self,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	107 config_params: Dict[str, Any],
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	108 split_config: Dict[str, Any],
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	109 ) -> str:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	110 logger.info("LudwigDirectBackend: Preparing YAML configuration.")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	111
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	112 model_name = config_params.get("model_name", "resnet18")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	113 use_pretrained = config_params.get("use_pretrained", False)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	114 fine_tune = config_params.get("fine_tune", False)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	115 if use_pretrained:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	116 trainable = bool(fine_tune)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	117 else:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	118 trainable = True
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	119 epochs = config_params.get("epochs", 10)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	120 batch_size = config_params.get("batch_size")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	121 num_processes = config_params.get("preprocessing_num_processes", 1)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	122 early_stop = config_params.get("early_stop", None)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	123 learning_rate = config_params.get("learning_rate")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	124 learning_rate = "auto" if learning_rate is None else float(learning_rate)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	125 raw_encoder = MODEL_ENCODER_TEMPLATES.get(model_name, model_name)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	126
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	127 # --- MetaFormer detection and config logic ---
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	128 def _is_metaformer(name: str) -> bool:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	129 return isinstance(name, str) and name.startswith(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	130 (
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	131 "identityformer_",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	132 "randformer_",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	133 "poolformerv2_",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	134 "convformer_",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	135 "caformer_",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	136 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	137 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	138
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	139 # Check if this is a MetaFormer model (either direct name or in custom_model)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	140 is_metaformer = (
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	141 _is_metaformer(model_name)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	142 or (isinstance(raw_encoder, dict) and "custom_model" in raw_encoder and _is_metaformer(raw_encoder["custom_model"]))
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	143 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	144
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	145 metaformer_resize: Optional[Tuple[int, int]] = None
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	146 metaformer_channels = 3
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	147
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	148 if is_metaformer:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	149 # Handle MetaFormer models
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	150 custom_model = None
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	151 if isinstance(raw_encoder, dict) and "custom_model" in raw_encoder:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	152 custom_model = raw_encoder["custom_model"]
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	153 else:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	154 custom_model = model_name
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	155
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	156 logger.info(f"DETECTED MetaFormer model: {custom_model}")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	157 cfg_channels, cfg_height, cfg_width = 3, 224, 224
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	158 if META_DEFAULT_CFGS:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	159 model_cfg = META_DEFAULT_CFGS.get(custom_model, {})
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	160 input_size = model_cfg.get("input_size")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	161 if isinstance(input_size, (list, tuple)) and len(input_size) == 3:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	162 cfg_channels, cfg_height, cfg_width = (
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	163 int(input_size[0]),
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	164 int(input_size[1]),
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	165 int(input_size[2]),
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	166 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	167
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	168 target_height, target_width = cfg_height, cfg_width
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	169 resize_value = config_params.get("image_resize")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	170 if resize_value and resize_value != "original":
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	171 try:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	172 dimensions = resize_value.split("x")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	173 if len(dimensions) == 2:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	174 target_height, target_width = int(dimensions[0]), int(dimensions[1])
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	175 if target_height <= 0 or target_width <= 0:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	176 raise ValueError(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	177 f"Image resize must be positive integers, received {resize_value}."
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	178 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	179 logger.info(f"MetaFormer explicit resize: {target_height}x{target_width}")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	180 else:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	181 raise ValueError(resize_value)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	182 except (ValueError, IndexError):
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	183 logger.warning(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	184 "Invalid image resize format '%s'; falling back to model default %sx%s",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	185 resize_value,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	186 cfg_height,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	187 cfg_width,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	188 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	189 target_height, target_width = cfg_height, cfg_width
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	190 else:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	191 image_zip_path = config_params.get("image_zip", "")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	192 detected_height, detected_width = self._detect_image_dimensions(image_zip_path)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	193 if use_pretrained:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	194 if (detected_height, detected_width) != (cfg_height, cfg_width):
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	195 logger.info(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	196 "MetaFormer pretrained weights expect %sx%s; resizing from detected %sx%s",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	197 cfg_height,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	198 cfg_width,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	199 detected_height,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	200 detected_width,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	201 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	202 else:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	203 target_height, target_width = detected_height, detected_width
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	204 if target_height <= 0 or target_width <= 0:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	205 raise ValueError(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	206 f"Invalid detected image dimensions for MetaFormer: {target_height}x{target_width}."
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	207 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	208
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	209 metaformer_channels = cfg_channels
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	210 metaformer_resize = (target_height, target_width)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	211
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	212 encoder_config = {
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	213 "type": "stacked_cnn",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	214 "height": target_height,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	215 "width": target_width,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	216 "num_channels": metaformer_channels,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	217 "output_size": 128,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	218 "use_pretrained": use_pretrained,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	219 "trainable": trainable,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	220 "custom_model": custom_model,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	221 }
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	222
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	223 elif isinstance(raw_encoder, dict):
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	224 # Handle image resize for regular encoders
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	225 # Note: Standard encoders like ResNet don't support height/width parameters
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	226 # Resize will be handled at the preprocessing level by Ludwig
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	227 if config_params.get("image_resize") and config_params["image_resize"] != "original":
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	228 logger.info(f"Resize requested: {config_params['image_resize']} for standard encoder. Resize will be handled at preprocessing level.")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	229
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	230 encoder_config = {
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	231 **raw_encoder,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	232 "use_pretrained": use_pretrained,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	233 "trainable": trainable,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	234 }
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	235 else:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	236 encoder_config = {"type": raw_encoder}
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	237
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	238 batch_size_cfg = batch_size or "auto"
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	239
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	240 label_column_path = config_params.get("label_column_data_path")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	241 label_series = None
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	242 label_metadata_hint = config_params.get("label_metadata") or {}
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	243 output_type_hint = config_params.get("output_type_hint")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	244 num_unique_labels = int(label_metadata_hint.get("num_unique", 2))
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	245 numeric_binary_labels = bool(label_metadata_hint.get("is_numeric_binary", False))
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	246 likely_regression = bool(label_metadata_hint.get("likely_regression", False))
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	247 if label_column_path is not None and Path(label_column_path).exists():
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	248 try:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	249 label_series = pd.read_csv(label_column_path)[LABEL_COLUMN_NAME]
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	250 non_na = label_series.dropna()
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	251 if not non_na.empty:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	252 num_unique_labels = non_na.nunique()
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	253 is_numeric = ptypes.is_numeric_dtype(label_series.dtype)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	254 numeric_binary_labels = is_numeric and num_unique_labels == 2
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	255 likely_regression = (
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	256 is_numeric and not numeric_binary_labels and num_unique_labels > 10
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	257 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	258 if numeric_binary_labels:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	259 logger.info(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	260 "Detected numeric binary labels in '%s'; configuring Ludwig for binary classification.",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	261 LABEL_COLUMN_NAME,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	262 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	263 except Exception as e:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	264 logger.warning(f"Could not read label column for task detection: {e}")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	265
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	266 if output_type_hint == "binary":
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	267 num_unique_labels = 2
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	268 numeric_binary_labels = numeric_binary_labels or bool(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	269 label_metadata_hint.get("is_numeric", False)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	270 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	271
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	272 if numeric_binary_labels:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	273 task_type = "classification"
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	274 elif likely_regression:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	275 task_type = "regression"
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	276 else:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	277 task_type = "classification"
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	278
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	279 if task_type == "regression" and numeric_binary_labels:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	280 logger.warning(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	281 "Numeric binary labels detected but regression task chosen; forcing classification to avoid invalid Ludwig config."
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	282 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	283 task_type = "classification"
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	284
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	285 config_params["task_type"] = task_type
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	286
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	287 image_feat: Dict[str, Any] = {
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	288 "name": IMAGE_PATH_COLUMN_NAME,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	289 "type": "image",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	290 }
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	291 # Set preprocessing dimensions FIRST for MetaFormer models
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	292 if is_metaformer:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	293 if metaformer_resize is None:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	294 metaformer_resize = (224, 224)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	295 height, width = metaformer_resize
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	296
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	297 # CRITICAL: Set preprocessing dimensions FIRST for MetaFormer models
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	298 # This is essential for MetaFormer models to work properly
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	299 if "preprocessing" not in image_feat:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	300 image_feat["preprocessing"] = {}
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	301 image_feat["preprocessing"]["height"] = height
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	302 image_feat["preprocessing"]["width"] = width
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	303 # Use infer_image_dimensions=True to allow Ludwig to read images for validation
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	304 # but set explicit max dimensions to control the output size
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	305 image_feat["preprocessing"]["infer_image_dimensions"] = True
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	306 image_feat["preprocessing"]["infer_image_max_height"] = height
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	307 image_feat["preprocessing"]["infer_image_max_width"] = width
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	308 image_feat["preprocessing"]["num_channels"] = metaformer_channels
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	309 image_feat["preprocessing"]["resize_method"] = "interpolate" # Use interpolation for better quality
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	310 image_feat["preprocessing"]["standardize_image"] = "imagenet1k" # Use ImageNet standardization
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	311 # Force Ludwig to respect our dimensions by setting additional parameters
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	312 image_feat["preprocessing"]["requires_equal_dimensions"] = False
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	313 logger.info(f"Set preprocessing dimensions for MetaFormer: {height}x{width} (infer_dimensions=True with max dimensions to allow validation)")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	314 # Now set the encoder configuration
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	315 image_feat["encoder"] = encoder_config
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	316
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	317 if config_params.get("augmentation") is not None:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	318 image_feat["augmentation"] = config_params["augmentation"]
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	319
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	320 # Add resize configuration for standard encoders (ResNet, etc.)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	321 # FIXED: MetaFormer models now respect user dimensions completely
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	322 # Previously there was a double resize issue where MetaFormer would force 224x224
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	323 # Now both MetaFormer and standard encoders respect user's resize choice
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	324 if (not is_metaformer) and config_params.get("image_resize") and config_params["image_resize"] != "original":
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	325 try:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	326 dimensions = config_params["image_resize"].split("x")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	327 if len(dimensions) == 2:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	328 height, width = int(dimensions[0]), int(dimensions[1])
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	329 if height <= 0 or width <= 0:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	330 raise ValueError(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	331 f"Image resize must be positive integers, received {config_params['image_resize']}."
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	332 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	333
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	334 # Add resize to preprocessing for standard encoders
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	335 if "preprocessing" not in image_feat:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	336 image_feat["preprocessing"] = {}
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	337 image_feat["preprocessing"]["height"] = height
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	338 image_feat["preprocessing"]["width"] = width
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	339 # Use infer_image_dimensions=True to allow Ludwig to read images for validation
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	340 # but set explicit max dimensions to control the output size
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	341 image_feat["preprocessing"]["infer_image_dimensions"] = True
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	342 image_feat["preprocessing"]["infer_image_max_height"] = height
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	343 image_feat["preprocessing"]["infer_image_max_width"] = width
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	344 logger.info(f"Added resize preprocessing: {height}x{width} for standard encoder with infer_image_dimensions=True and max dimensions")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	345 except (ValueError, IndexError):
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	346 logger.warning(f"Invalid image resize format: {config_params['image_resize']}, skipping resize preprocessing")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	347 if task_type == "regression":
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	348 output_feat = {
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	349 "name": LABEL_COLUMN_NAME,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	350 "type": "number",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	351 "decoder": {"type": "regressor"},
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	352 "loss": {"type": "mean_squared_error"},
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	353 }
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	354 val_metric = config_params.get("validation_metric", "mean_squared_error")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	355
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	356 else:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	357 if num_unique_labels == 2:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	358 output_feat = {
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	359 "name": LABEL_COLUMN_NAME,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	360 "type": "binary",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	361 "loss": {"type": "binary_weighted_cross_entropy"},
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	362 }
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	363 if config_params.get("threshold") is not None:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	364 output_feat["threshold"] = float(config_params["threshold"])
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	365 else:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	366 output_feat = {
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	367 "name": LABEL_COLUMN_NAME,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	368 "type": "category",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	369 "loss": {"type": "softmax_cross_entropy"},
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	370 }
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	371 val_metric = None
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	372
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	373 conf: Dict[str, Any] = {
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	374 "model_type": "ecd",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	375 "input_features": [image_feat],
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	376 "output_features": [output_feat],
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	377 "combiner": {"type": "concat"},
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	378 "trainer": {
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	379 "epochs": epochs,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	380 "early_stop": early_stop,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	381 "batch_size": batch_size_cfg,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	382 "learning_rate": learning_rate,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	383 # only set validation_metric for regression
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	384 **({"validation_metric": val_metric} if val_metric else {}),
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	385 },
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	386 "preprocessing": {
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	387 "split": split_config,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	388 "num_processes": num_processes,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	389 "in_memory": False,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	390 },
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	391 }
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	392
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	393 logger.debug("LudwigDirectBackend: Config dict built.")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	394 try:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	395 yaml_str = yaml.dump(conf, sort_keys=False, indent=2)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	396 logger.info("LudwigDirectBackend: YAML config generated.")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	397 return yaml_str
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	398 except Exception:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	399 logger.error(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	400 "LudwigDirectBackend: Failed to serialize YAML.",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	401 exc_info=True,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	402 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	403 raise
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	404
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	405 def run_experiment(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	406 self,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	407 dataset_path: Path,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	408 config_path: Path,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	409 output_dir: Path,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	410 random_seed: int = 42,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	411 ) -> None:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	412 """Invoke Ludwig's internal experiment_cli function to run the experiment."""
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	413 logger.info("LudwigDirectBackend: Starting experiment execution.")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	414
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	415 try:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	416 from ludwig.experiment import experiment_cli
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	417 except ImportError as e:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	418 logger.error(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	419 "LudwigDirectBackend: Could not import experiment_cli.",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	420 exc_info=True,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	421 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	422 raise RuntimeError("Ludwig import failed.") from e
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	423
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	424 output_dir.mkdir(parents=True, exist_ok=True)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	425
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	426 try:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	427 experiment_cli(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	428 dataset=str(dataset_path),
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	429 config=str(config_path),
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	430 output_directory=str(output_dir),
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	431 random_seed=random_seed,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	432 skip_preprocessing=True,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	433 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	434 logger.info(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	435 f"LudwigDirectBackend: Experiment completed. Results in {output_dir}"
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	436 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	437 except TypeError as e:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	438 logger.error(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	439 "LudwigDirectBackend: Argument mismatch in experiment_cli call.",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	440 exc_info=True,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	441 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	442 raise RuntimeError("Ludwig argument error.") from e
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	443 except Exception:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	444 logger.error(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	445 "LudwigDirectBackend: Experiment execution error.",
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	446 exc_info=True,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	447 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	448 raise
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	449
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	450 def get_training_process(self, output_dir) -> Optional[Dict[str, Any]]:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	451 """Retrieve the learning rate used in the most recent Ludwig run."""
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	452 output_dir = Path(output_dir)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	453 exp_dirs = sorted(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	454 output_dir.glob("experiment_run*"),
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	455 key=lambda p: p.stat().st_mtime,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	456 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	457
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	458 if not exp_dirs:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	459 logger.warning(f"No experiment run directories found in {output_dir}")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	460 return None
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	461
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	462 progress_file = exp_dirs[-1] / "model" / "training_progress.json"
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	463 if not progress_file.exists():
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	464 logger.warning(f"No training_progress.json found in {progress_file}")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	465 return None
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	466
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	467 try:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	468 with progress_file.open("r", encoding="utf-8") as f:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	469 data = json.load(f)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	470 return {
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	471 "learning_rate": data.get("learning_rate"),
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	472 "batch_size": data.get("batch_size"),
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	473 "epoch": data.get("epoch"),
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	474 }
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	475 except Exception as e:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	476 logger.warning(f"Failed to read training progress info: {e}")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	477 return {}
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	478
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	479 def convert_parquet_to_csv(self, output_dir: Path):
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	480 """Convert the predictions Parquet file to CSV."""
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	481 output_dir = Path(output_dir)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	482 exp_dirs = sorted(
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	483 output_dir.glob("experiment_run*"),
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	484 key=lambda p: p.stat().st_mtime,
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	485 )
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	486 if not exp_dirs:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	487 logger.warning(f"No experiment run dirs found in {output_dir}")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	488 return
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	489 exp_dir = exp_dirs[-1]
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	490 parquet_path = exp_dir / PREDICTIONS_PARQUET_FILE_NAME
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	491 csv_path = exp_dir / "predictions.csv"
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	492
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	493 # Check if parquet file exists before trying to convert
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	494 if not parquet_path.exists():
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	495 logger.info(f"Predictions parquet file not found at {parquet_path}, skipping conversion")
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	496 return
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	497
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	498 try:
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	499 df = pd.read_parquet(parquet_path)
bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2 goeckslab parents: diff changeset	500 df.to_csv(csv_path, index=False)

12

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

1 import json

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

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diff changeset

2 import logging

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

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diff changeset

3 from pathlib import Path

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

4 from typing import Any, Dict, Optional, Protocol, Tuple

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

5

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

6 import pandas as pd

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

7 import pandas.api.types as ptypes

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

8 import yaml

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

9 from constants import (

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

10 IMAGE_PATH_COLUMN_NAME,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

11 LABEL_COLUMN_NAME,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

12 MODEL_ENCODER_TEMPLATES,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

13 SPLIT_COLUMN_NAME,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

14 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

15 from html_structure import (

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

16 build_tabbed_html,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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17 encode_image_to_base64,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

18 format_config_table_html,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

19 format_stats_table_html,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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parents:

diff changeset

20 format_test_merged_stats_table_html,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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21 format_train_val_stats_table_html,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

22 get_html_closing,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

23 get_html_template,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

24 get_metrics_help_modal,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

25 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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parents:

diff changeset

26 from ludwig.globals import (

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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parents:

diff changeset

27 DESCRIPTION_FILE_NAME,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

28 PREDICTIONS_PARQUET_FILE_NAME,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

29 TEST_STATISTICS_FILE_NAME,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

30 TRAIN_SET_METADATA_FILE_NAME,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

31 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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diff changeset

32 from ludwig.utils.data_utils import get_split_path

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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33 from metaformer_setup import get_visualizations_registry, META_DEFAULT_CFGS

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34 from plotly_plots import build_classification_plots

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35 from utils import detect_output_type, extract_metrics_from_json

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36

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37 logger = logging.getLogger("ImageLearner")

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38

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39

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40 class Backend(Protocol):

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41 """Interface for a machine learning backend."""

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42

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43 def prepare_config(

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44 self,

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45 config_params: Dict[str, Any],

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46 split_config: Dict[str, Any],

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47 ) -> str:

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48 ...

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49

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50 def run_experiment(

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51 self,

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52 dataset_path: Path,

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53 config_path: Path,

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54 output_dir: Path,

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55 random_seed: int,

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56 ) -> None:

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57 ...

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58

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59 def generate_plots(self, output_dir: Path) -> None:

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60 ...

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61

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62 def generate_html_report(

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63 self,

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64 title: str,

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65 output_dir: str,

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66 config: Dict[str, Any],

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67 split_info: str,

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68 ) -> Path:

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69 ...

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70

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71

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72 class LudwigDirectBackend:

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73 """Backend for running Ludwig experiments directly via the internal experiment_cli function."""

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74

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75 def _detect_image_dimensions(self, image_zip_path: str) -> Tuple[int, int]:

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76 """Detect image dimensions from the first image in the dataset."""

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77 try:

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78 import zipfile

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79 from PIL import Image

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80 import io

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81

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82 # Check if image_zip is provided

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83 if not image_zip_path:

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84 logger.warning("No image zip provided, using default 224x224")

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85 return 224, 224

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86

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87 # Extract first image to detect dimensions

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88 with zipfile.ZipFile(image_zip_path, 'r') as z:

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89 image_files = [f for f in z.namelist() if f.lower().endswith(('.png', '.jpg', '.jpeg'))]

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90 if not image_files:

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91 logger.warning("No image files found in zip, using default 224x224")

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92 return 224, 224

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93

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94 # Check first image

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95 with z.open(image_files[0]) as f:

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96 img = Image.open(io.BytesIO(f.read()))

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97 width, height = img.size

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98 logger.info(f"Detected image dimensions: {width}x{height}")

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99 return height, width # Return as (height, width) to match encoder config

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100

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101 except Exception as e:

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102 logger.warning(f"Error detecting image dimensions: {e}, using default 224x224")

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103 return 224, 224

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104

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105 def prepare_config(

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106 self,

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107 config_params: Dict[str, Any],

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108 split_config: Dict[str, Any],

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109 ) -> str:

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110 logger.info("LudwigDirectBackend: Preparing YAML configuration.")

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111

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112 model_name = config_params.get("model_name", "resnet18")

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113 use_pretrained = config_params.get("use_pretrained", False)

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114 fine_tune = config_params.get("fine_tune", False)

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115 if use_pretrained:

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116 trainable = bool(fine_tune)

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117 else:

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118 trainable = True

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119 epochs = config_params.get("epochs", 10)

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120 batch_size = config_params.get("batch_size")

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121 num_processes = config_params.get("preprocessing_num_processes", 1)

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122 early_stop = config_params.get("early_stop", None)

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123 learning_rate = config_params.get("learning_rate")

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124 learning_rate = "auto" if learning_rate is None else float(learning_rate)

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125 raw_encoder = MODEL_ENCODER_TEMPLATES.get(model_name, model_name)

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126

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127 # --- MetaFormer detection and config logic ---

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128 def _is_metaformer(name: str) -> bool:

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129 return isinstance(name, str) and name.startswith(

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130 (

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131 "identityformer_",

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132 "randformer_",

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133 "poolformerv2_",

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134 "convformer_",

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135 "caformer_",

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136 )

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137 )

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138

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139 # Check if this is a MetaFormer model (either direct name or in custom_model)

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140 is_metaformer = (

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141 _is_metaformer(model_name)

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142 or (isinstance(raw_encoder, dict) and "custom_model" in raw_encoder and _is_metaformer(raw_encoder["custom_model"]))

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143 )

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144

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145 metaformer_resize: Optional[Tuple[int, int]] = None

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146 metaformer_channels = 3

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147

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148 if is_metaformer:

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149 # Handle MetaFormer models

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150 custom_model = None

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151 if isinstance(raw_encoder, dict) and "custom_model" in raw_encoder:

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152 custom_model = raw_encoder["custom_model"]

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153 else:

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154 custom_model = model_name

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155

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156 logger.info(f"DETECTED MetaFormer model: {custom_model}")

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157 cfg_channels, cfg_height, cfg_width = 3, 224, 224

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158 if META_DEFAULT_CFGS:

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159 model_cfg = META_DEFAULT_CFGS.get(custom_model, {})

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160 input_size = model_cfg.get("input_size")

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161 if isinstance(input_size, (list, tuple)) and len(input_size) == 3:

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162 cfg_channels, cfg_height, cfg_width = (

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163 int(input_size[0]),

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164 int(input_size[1]),

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165 int(input_size[2]),

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166 )

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167

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168 target_height, target_width = cfg_height, cfg_width

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169 resize_value = config_params.get("image_resize")

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170 if resize_value and resize_value != "original":

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171 try:

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172 dimensions = resize_value.split("x")

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173 if len(dimensions) == 2:

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174 target_height, target_width = int(dimensions[0]), int(dimensions[1])

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175 if target_height <= 0 or target_width <= 0:

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176 raise ValueError(

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177 f"Image resize must be positive integers, received {resize_value}."

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178 )

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179 logger.info(f"MetaFormer explicit resize: {target_height}x{target_width}")

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180 else:

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181 raise ValueError(resize_value)

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182 except (ValueError, IndexError):

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183 logger.warning(

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184 "Invalid image resize format '%s'; falling back to model default %sx%s",

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185 resize_value,

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186 cfg_height,

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187 cfg_width,

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188 )

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189 target_height, target_width = cfg_height, cfg_width

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190 else:

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191 image_zip_path = config_params.get("image_zip", "")

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192 detected_height, detected_width = self._detect_image_dimensions(image_zip_path)

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193 if use_pretrained:

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194 if (detected_height, detected_width) != (cfg_height, cfg_width):

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195 logger.info(

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196 "MetaFormer pretrained weights expect %sx%s; resizing from detected %sx%s",

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197 cfg_height,

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198 cfg_width,

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199 detected_height,

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200 detected_width,

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201 )

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202 else:

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203 target_height, target_width = detected_height, detected_width

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204 if target_height <= 0 or target_width <= 0:

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205 raise ValueError(

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206 f"Invalid detected image dimensions for MetaFormer: {target_height}x{target_width}."

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207 )

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208

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209 metaformer_channels = cfg_channels

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210 metaformer_resize = (target_height, target_width)

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211

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212 encoder_config = {

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213 "type": "stacked_cnn",

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214 "height": target_height,

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215 "width": target_width,

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216 "num_channels": metaformer_channels,

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217 "output_size": 128,

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218 "use_pretrained": use_pretrained,

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219 "trainable": trainable,

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220 "custom_model": custom_model,

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221 }

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222

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223 elif isinstance(raw_encoder, dict):

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224 # Handle image resize for regular encoders

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225 # Note: Standard encoders like ResNet don't support height/width parameters

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226 # Resize will be handled at the preprocessing level by Ludwig

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227 if config_params.get("image_resize") and config_params["image_resize"] != "original":

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228 logger.info(f"Resize requested: {config_params['image_resize']} for standard encoder. Resize will be handled at preprocessing level.")

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229

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230 encoder_config = {

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231 **raw_encoder,

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232 "use_pretrained": use_pretrained,

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233 "trainable": trainable,

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234 }

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235 else:

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236 encoder_config = {"type": raw_encoder}

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237

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238 batch_size_cfg = batch_size or "auto"

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239

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240 label_column_path = config_params.get("label_column_data_path")

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241 label_series = None

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242 label_metadata_hint = config_params.get("label_metadata") or {}

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243 output_type_hint = config_params.get("output_type_hint")

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244 num_unique_labels = int(label_metadata_hint.get("num_unique", 2))

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245 numeric_binary_labels = bool(label_metadata_hint.get("is_numeric_binary", False))

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246 likely_regression = bool(label_metadata_hint.get("likely_regression", False))

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247 if label_column_path is not None and Path(label_column_path).exists():

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248 try:

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249 label_series = pd.read_csv(label_column_path)[LABEL_COLUMN_NAME]

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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250 non_na = label_series.dropna()

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251 if not non_na.empty:

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252 num_unique_labels = non_na.nunique()

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253 is_numeric = ptypes.is_numeric_dtype(label_series.dtype)

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254 numeric_binary_labels = is_numeric and num_unique_labels == 2

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255 likely_regression = (

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256 is_numeric and not numeric_binary_labels and num_unique_labels > 10

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257 )

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258 if numeric_binary_labels:

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259 logger.info(

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260 "Detected numeric binary labels in '%s'; configuring Ludwig for binary classification.",

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261 LABEL_COLUMN_NAME,

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262 )

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263 except Exception as e:

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264 logger.warning(f"Could not read label column for task detection: {e}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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265

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266 if output_type_hint == "binary":

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267 num_unique_labels = 2

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268 numeric_binary_labels = numeric_binary_labels or bool(

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269 label_metadata_hint.get("is_numeric", False)

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270 )

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271

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272 if numeric_binary_labels:

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273 task_type = "classification"

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274 elif likely_regression:

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275 task_type = "regression"

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276 else:

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277 task_type = "classification"

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278

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279 if task_type == "regression" and numeric_binary_labels:

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280 logger.warning(

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281 "Numeric binary labels detected but regression task chosen; forcing classification to avoid invalid Ludwig config."

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282 )

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283 task_type = "classification"

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284

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285 config_params["task_type"] = task_type

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286

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287 image_feat: Dict[str, Any] = {

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288 "name": IMAGE_PATH_COLUMN_NAME,

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289 "type": "image",

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290 }

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291 # Set preprocessing dimensions FIRST for MetaFormer models

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292 if is_metaformer:

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293 if metaformer_resize is None:

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294 metaformer_resize = (224, 224)

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295 height, width = metaformer_resize

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296

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297 # CRITICAL: Set preprocessing dimensions FIRST for MetaFormer models

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298 # This is essential for MetaFormer models to work properly

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299 if "preprocessing" not in image_feat:

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300 image_feat["preprocessing"] = {}

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301 image_feat["preprocessing"]["height"] = height

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302 image_feat["preprocessing"]["width"] = width

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303 # Use infer_image_dimensions=True to allow Ludwig to read images for validation

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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304 # but set explicit max dimensions to control the output size

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305 image_feat["preprocessing"]["infer_image_dimensions"] = True

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306 image_feat["preprocessing"]["infer_image_max_height"] = height

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307 image_feat["preprocessing"]["infer_image_max_width"] = width

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308 image_feat["preprocessing"]["num_channels"] = metaformer_channels

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309 image_feat["preprocessing"]["resize_method"] = "interpolate" # Use interpolation for better quality

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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310 image_feat["preprocessing"]["standardize_image"] = "imagenet1k" # Use ImageNet standardization

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311 # Force Ludwig to respect our dimensions by setting additional parameters

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312 image_feat["preprocessing"]["requires_equal_dimensions"] = False

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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313 logger.info(f"Set preprocessing dimensions for MetaFormer: {height}x{width} (infer_dimensions=True with max dimensions to allow validation)")

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314 # Now set the encoder configuration

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315 image_feat["encoder"] = encoder_config

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diff changeset

316

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317 if config_params.get("augmentation") is not None:

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318 image_feat["augmentation"] = config_params["augmentation"]

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diff changeset

319

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320 # Add resize configuration for standard encoders (ResNet, etc.)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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321 # FIXED: MetaFormer models now respect user dimensions completely

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322 # Previously there was a double resize issue where MetaFormer would force 224x224

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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323 # Now both MetaFormer and standard encoders respect user's resize choice

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

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324 if (not is_metaformer) and config_params.get("image_resize") and config_params["image_resize"] != "original":

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diff changeset

325 try:

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diff changeset

326 dimensions = config_params["image_resize"].split("x")

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diff changeset

327 if len(dimensions) == 2:

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328 height, width = int(dimensions[0]), int(dimensions[1])

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329 if height <= 0 or width <= 0:

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diff changeset

330 raise ValueError(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

331 f"Image resize must be positive integers, received {config_params['image_resize']}."

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

332 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

333

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

334 # Add resize to preprocessing for standard encoders

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

335 if "preprocessing" not in image_feat:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

336 image_feat["preprocessing"] = {}

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

337 image_feat["preprocessing"]["height"] = height

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

338 image_feat["preprocessing"]["width"] = width

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

339 # Use infer_image_dimensions=True to allow Ludwig to read images for validation

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

340 # but set explicit max dimensions to control the output size

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

341 image_feat["preprocessing"]["infer_image_dimensions"] = True

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

342 image_feat["preprocessing"]["infer_image_max_height"] = height

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

343 image_feat["preprocessing"]["infer_image_max_width"] = width

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

344 logger.info(f"Added resize preprocessing: {height}x{width} for standard encoder with infer_image_dimensions=True and max dimensions")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

345 except (ValueError, IndexError):

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

346 logger.warning(f"Invalid image resize format: {config_params['image_resize']}, skipping resize preprocessing")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

347 if task_type == "regression":

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

348 output_feat = {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

349 "name": LABEL_COLUMN_NAME,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

350 "type": "number",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

351 "decoder": {"type": "regressor"},

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

352 "loss": {"type": "mean_squared_error"},

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

353 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

354 val_metric = config_params.get("validation_metric", "mean_squared_error")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

355

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

356 else:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

357 if num_unique_labels == 2:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

358 output_feat = {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

359 "name": LABEL_COLUMN_NAME,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

360 "type": "binary",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

361 "loss": {"type": "binary_weighted_cross_entropy"},

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

362 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

363 if config_params.get("threshold") is not None:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

364 output_feat["threshold"] = float(config_params["threshold"])

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

365 else:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

366 output_feat = {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

367 "name": LABEL_COLUMN_NAME,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

368 "type": "category",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

369 "loss": {"type": "softmax_cross_entropy"},

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

370 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

371 val_metric = None

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

372

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

373 conf: Dict[str, Any] = {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

374 "model_type": "ecd",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

375 "input_features": [image_feat],

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

376 "output_features": [output_feat],

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

377 "combiner": {"type": "concat"},

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

378 "trainer": {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

379 "epochs": epochs,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

380 "early_stop": early_stop,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

381 "batch_size": batch_size_cfg,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

382 "learning_rate": learning_rate,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

383 # only set validation_metric for regression

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

384 **({"validation_metric": val_metric} if val_metric else {}),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

385 },

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

386 "preprocessing": {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

387 "split": split_config,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

388 "num_processes": num_processes,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

389 "in_memory": False,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

390 },

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

391 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

392

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

393 logger.debug("LudwigDirectBackend: Config dict built.")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

394 try:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

395 yaml_str = yaml.dump(conf, sort_keys=False, indent=2)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

396 logger.info("LudwigDirectBackend: YAML config generated.")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

397 return yaml_str

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

398 except Exception:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

399 logger.error(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

400 "LudwigDirectBackend: Failed to serialize YAML.",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

401 exc_info=True,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

402 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

403 raise

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

404

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

405 def run_experiment(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

406 self,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

407 dataset_path: Path,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

408 config_path: Path,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

409 output_dir: Path,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

410 random_seed: int = 42,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

411 ) -> None:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

412 """Invoke Ludwig's internal experiment_cli function to run the experiment."""

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

413 logger.info("LudwigDirectBackend: Starting experiment execution.")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

414

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

415 try:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

416 from ludwig.experiment import experiment_cli

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

417 except ImportError as e:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

418 logger.error(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

419 "LudwigDirectBackend: Could not import experiment_cli.",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

420 exc_info=True,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

421 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

422 raise RuntimeError("Ludwig import failed.") from e

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

423

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

424 output_dir.mkdir(parents=True, exist_ok=True)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

425

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

426 try:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

427 experiment_cli(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

428 dataset=str(dataset_path),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

429 config=str(config_path),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

430 output_directory=str(output_dir),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

431 random_seed=random_seed,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

432 skip_preprocessing=True,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

433 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

434 logger.info(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

435 f"LudwigDirectBackend: Experiment completed. Results in {output_dir}"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

436 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

437 except TypeError as e:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

438 logger.error(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

439 "LudwigDirectBackend: Argument mismatch in experiment_cli call.",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

440 exc_info=True,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

441 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

442 raise RuntimeError("Ludwig argument error.") from e

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

443 except Exception:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

444 logger.error(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

445 "LudwigDirectBackend: Experiment execution error.",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

446 exc_info=True,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

447 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

448 raise

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

449

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

450 def get_training_process(self, output_dir) -> Optional[Dict[str, Any]]:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

451 """Retrieve the learning rate used in the most recent Ludwig run."""

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

452 output_dir = Path(output_dir)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

453 exp_dirs = sorted(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

454 output_dir.glob("experiment_run*"),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

455 key=lambda p: p.stat().st_mtime,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

456 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

457

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

458 if not exp_dirs:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

459 logger.warning(f"No experiment run directories found in {output_dir}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

460 return None

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

461

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

462 progress_file = exp_dirs[-1] / "model" / "training_progress.json"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

463 if not progress_file.exists():

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

464 logger.warning(f"No training_progress.json found in {progress_file}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

465 return None

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

466

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

467 try:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

468 with progress_file.open("r", encoding="utf-8") as f:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

469 data = json.load(f)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

470 return {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

471 "learning_rate": data.get("learning_rate"),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

472 "batch_size": data.get("batch_size"),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

473 "epoch": data.get("epoch"),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

474 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

475 except Exception as e:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

476 logger.warning(f"Failed to read training progress info: {e}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

477 return {}

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

478

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

479 def convert_parquet_to_csv(self, output_dir: Path):

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

480 """Convert the predictions Parquet file to CSV."""

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

481 output_dir = Path(output_dir)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

482 exp_dirs = sorted(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

483 output_dir.glob("experiment_run*"),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

484 key=lambda p: p.stat().st_mtime,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

485 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

486 if not exp_dirs:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

487 logger.warning(f"No experiment run dirs found in {output_dir}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

488 return

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

489 exp_dir = exp_dirs[-1]

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

490 parquet_path = exp_dir / PREDICTIONS_PARQUET_FILE_NAME

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

491 csv_path = exp_dir / "predictions.csv"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

492

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

493 # Check if parquet file exists before trying to convert

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

494 if not parquet_path.exists():

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

495 logger.info(f"Predictions parquet file not found at {parquet_path}, skipping conversion")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

496 return

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

497

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

498 try:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

499 df = pd.read_parquet(parquet_path)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

500 df.to_csv(csv_path, index=False)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

501 logger.info(f"Converted Parquet to CSV: {csv_path}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

502 except Exception as e:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

503 logger.error(f"Error converting Parquet to CSV: {e}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

504

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

505 def generate_plots(self, output_dir: Path) -> None:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

506 """Generate all registered Ludwig visualizations for the latest experiment run."""

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

507 logger.info("Generating all Ludwig visualizations…")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

508

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

509 test_plots = {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

510 "compare_performance",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

511 "compare_classifiers_performance_from_prob",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

512 "compare_classifiers_performance_from_pred",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

513 "compare_classifiers_performance_changing_k",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

514 "compare_classifiers_multiclass_multimetric",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

515 "compare_classifiers_predictions",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

516 "confidence_thresholding_2thresholds_2d",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

517 "confidence_thresholding_2thresholds_3d",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

518 "confidence_thresholding",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

519 "confidence_thresholding_data_vs_acc",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

520 "binary_threshold_vs_metric",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

521 "roc_curves",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

522 "roc_curves_from_test_statistics",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

523 "calibration_1_vs_all",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

524 "calibration_multiclass",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

525 "confusion_matrix",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

526 "frequency_vs_f1",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

527 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

528 train_plots = {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

529 "learning_curves",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

530 "compare_classifiers_performance_subset",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

531 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

532

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

533 output_dir = Path(output_dir)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

534 exp_dirs = sorted(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

535 output_dir.glob("experiment_run*"),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

536 key=lambda p: p.stat().st_mtime,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

537 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

538 if not exp_dirs:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

539 logger.warning(f"No experiment run dirs found in {output_dir}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

540 return

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

541 exp_dir = exp_dirs[-1]

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

542

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

543 viz_dir = exp_dir / "visualizations"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

544 viz_dir.mkdir(exist_ok=True)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

545 train_viz = viz_dir / "train"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

546 test_viz = viz_dir / "test"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

547 train_viz.mkdir(parents=True, exist_ok=True)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

548 test_viz.mkdir(parents=True, exist_ok=True)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

549

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

550 def _check(p: Path) -> Optional[str]:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

551 return str(p) if p.exists() else None

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

552

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

553 training_stats = _check(exp_dir / "training_statistics.json")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

554 test_stats = _check(exp_dir / TEST_STATISTICS_FILE_NAME)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

555 probs_path = _check(exp_dir / PREDICTIONS_PARQUET_FILE_NAME)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

556 gt_metadata = _check(exp_dir / "model" / TRAIN_SET_METADATA_FILE_NAME)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

557

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

558 dataset_path = None

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

559 split_file = None

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

560 desc = exp_dir / DESCRIPTION_FILE_NAME

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

561 if desc.exists():

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

562 with open(desc, "r") as f:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

563 cfg = json.load(f)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

564 dataset_path = _check(Path(cfg.get("dataset", "")))

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

565 split_file = _check(Path(get_split_path(cfg.get("dataset", ""))))

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

566

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

567 output_feature = ""

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

568 if desc.exists():

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

569 try:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

570 output_feature = cfg["config"]["output_features"][0]["name"]

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

571 except Exception:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

572 pass

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

573 if not output_feature and test_stats:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

574 with open(test_stats, "r") as f:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

575 stats = json.load(f)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

576 output_feature = next(iter(stats.keys()), "")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

577

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

578 viz_registry = get_visualizations_registry()

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

579 for viz_name, viz_func in viz_registry.items():

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

580 if viz_name in train_plots:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

581 viz_dir_plot = train_viz

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

582 elif viz_name in test_plots:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

583 viz_dir_plot = test_viz

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

584 else:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

585 continue

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

586

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

587 try:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

588 viz_func(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

589 training_statistics=[training_stats] if training_stats else [],

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

590 test_statistics=[test_stats] if test_stats else [],

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

591 probabilities=[probs_path] if probs_path else [],

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

592 output_feature_name=output_feature,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

593 ground_truth_split=2,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

594 top_n_classes=[0],

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

595 top_k=3,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

596 ground_truth_metadata=gt_metadata,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

597 ground_truth=dataset_path,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

598 split_file=split_file,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

599 output_directory=str(viz_dir_plot),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

600 normalize=False,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

601 file_format="png",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

602 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

603 logger.info(f"✔ Generated {viz_name}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

604 except Exception as e:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

605 logger.warning(f"✘ Skipped {viz_name}: {e}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

606

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

607 logger.info(f"All visualizations written to {viz_dir}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

608

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

609 def generate_html_report(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

610 self,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

611 title: str,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

612 output_dir: str,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

613 config: dict,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

614 split_info: str,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

615 ) -> Path:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

616 """Assemble an HTML report from visualizations under train_val/ and test/ folders."""

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

617 cwd = Path.cwd()

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

618 report_name = title.lower().replace(" ", "_") + "_report.html"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

619 report_path = cwd / report_name

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

620 output_dir = Path(output_dir)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

621 output_type = None

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

622

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

623 exp_dirs = sorted(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

624 output_dir.glob("experiment_run*"),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

625 key=lambda p: p.stat().st_mtime,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

626 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

627 if not exp_dirs:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

628 raise RuntimeError(f"No 'experiment*' dirs found in {output_dir}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

629 exp_dir = exp_dirs[-1]

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

630

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

631 base_viz_dir = exp_dir / "visualizations"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

632 train_viz_dir = base_viz_dir / "train"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

633 test_viz_dir = base_viz_dir / "test"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

634

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

635 html = get_html_template()

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

636

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

637 # Extra CSS & JS: center Plotly and enable CSV download for predictions table

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

638 html += """

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

639 <style>

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

640 /* Center Plotly figures (both wrapper and native classes) */

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

641 .plotly-center { display: flex; justify-content: center; }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

642 .plotly-center .plotly-graph-div, .plotly-center .js-plotly-plot { margin: 0 auto !important; }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

643 .js-plotly-plot, .plotly-graph-div { margin-left: auto !important; margin-right: auto !important; }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

644

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

645 /* Download button for predictions table */

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

646 .download-btn {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

647 padding: 8px 12px;

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

648 border: 1px solid #4CAF50;

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

649 background: #4CAF50;

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

650 color: white;

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

651 border-radius: 6px;

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

652 cursor: pointer;

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

653 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

654 .download-btn:hover { filter: brightness(0.95); }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

655 .preds-controls {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

656 display: flex;

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

657 justify-content: flex-end;

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

658 gap: 8px;

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

659 margin: 8px 0;

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

660 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

661 </style>

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

662 <script>

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

663 function tableToCSV(table){

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

664 const rows = Array.from(table.querySelectorAll('tr'));

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

665 return rows.map(row =>

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

666 Array.from(row.querySelectorAll('th,td')).map(cell => {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

667 let text = cell.innerText.replace(/\\r?\\n|\\r/g,' ').trim();

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

668 if (text.includes('"') || text.includes(',')) {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

669 text = '"' + text.replace(/"/g,'""') + '"';

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

670 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

671 return text;

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

672 }).join(',')

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

673 ).join('\\n');

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

674 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

675 document.addEventListener('DOMContentLoaded', function(){

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

676 const btn = document.getElementById('downloadPredsCsv');

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

677 if(btn){

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

678 btn.addEventListener('click', function(){

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

679 const tbl = document.querySelector('.predictions-table');

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

680 if(!tbl){ alert('Predictions table not found.'); return; }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

681 const csv = tableToCSV(tbl);

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

682 const blob = new Blob([csv], {type: 'text/csv;charset=utf-8;'});

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

683 const url = URL.createObjectURL(blob);

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

684 const a = document.createElement('a');

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

685 a.href = url;

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

686 a.download = 'ground_truth_vs_predictions.csv';

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

687 document.body.appendChild(a);

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

688 a.click();

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

689 document.body.removeChild(a);

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

690 URL.revokeObjectURL(url);

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

691 });

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

692 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

693 });

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

694 </script>

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

695 """

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

696 html += f"<h1>{title}</h1>"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

697

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

698 metrics_html = ""

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

699 train_val_metrics_html = ""

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

700 test_metrics_html = ""

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

701 try:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

702 train_stats_path = exp_dir / "training_statistics.json"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

703 test_stats_path = exp_dir / TEST_STATISTICS_FILE_NAME

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

704 if train_stats_path.exists() and test_stats_path.exists():

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

705 with open(train_stats_path) as f:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

706 train_stats = json.load(f)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

707 with open(test_stats_path) as f:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

708 test_stats = json.load(f)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

709 output_type = detect_output_type(test_stats)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

710 metrics_html = format_stats_table_html(train_stats, test_stats, output_type)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

711 train_val_metrics_html = format_train_val_stats_table_html(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

712 train_stats, test_stats

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

713 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

714 test_metrics_html = format_test_merged_stats_table_html(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

715 extract_metrics_from_json(train_stats, test_stats, output_type)[

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

716 "test"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

717 ], output_type

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

718 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

719 except Exception as e:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

720 logger.warning(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

721 f"Could not load stats for HTML report: {type(e).__name__}: {e}"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

722 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

723

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

724 config_html = ""

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

725 training_progress = self.get_training_process(output_dir)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

726 try:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

727 config_html = format_config_table_html(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

728 config, split_info, training_progress, output_type

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

729 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

730 except Exception as e:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

731 logger.warning(f"Could not load config for HTML report: {e}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

732

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

733 # ---------- image rendering with exclusions ----------

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

734 def render_img_section(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

735 title: str,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

736 dir_path: Path,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

737 output_type: str = None,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

738 exclude_names: Optional[set] = None,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

739 ) -> str:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

740 if not dir_path.exists():

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

741 return f"<h2>{title}</h2><p><em>Directory not found.</em></p>"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

742

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

743 exclude_names = exclude_names or set()

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

744

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

745 imgs = list(dir_path.glob("*.png"))

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

746

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

747 # Exclude ROC curves and standard confusion matrices (keep only entropy version)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

748 default_exclude = {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

749 # "roc_curves.png", # Remove ROC curves from test tab

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

750 "confusion_matrix__label_top5.png", # Remove standard confusion matrix

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

751 "confusion_matrix__label_top10.png", # Remove duplicate

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

752 "confusion_matrix__label_top6.png", # Remove duplicate

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

753 "confusion_matrix_entropy__label_top10.png", # Keep only top5

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

754 "confusion_matrix_entropy__label_top6.png", # Keep only top5

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

755 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

756 title_is_test = title.lower().startswith("test")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

757 if title_is_test and output_type == "binary":

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

758 default_exclude.update(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

759 {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

760 "confusion_matrix__label_top2.png",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

761 "confusion_matrix_entropy__label_top2.png",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

762 "roc_curves_from_prediction_statistics.png",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

763 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

764 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

765 elif title_is_test and output_type == "category":

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

766 default_exclude.update(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

767 {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

768 "compare_classifiers_multiclass_multimetric__label_best10.png",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

769 "compare_classifiers_multiclass_multimetric__label_sorted.png",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

770 "compare_classifiers_multiclass_multimetric__label_worst10.png",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

771 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

772 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

773

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

774 imgs = [

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

775 img

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

776 for img in imgs

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

777 if img.name not in default_exclude

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

778 and img.name not in exclude_names

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

779 ]

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

780

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

781 if not imgs:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

782 return f"<h2>{title}</h2><p><em>No plots found.</em></p>"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

783

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

784 # Sort images by name for consistent ordering (works with string and numeric labels)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

785 imgs = sorted(imgs, key=lambda x: x.name)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

786

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

787 html_section = ""

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

788 custom_titles = {

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

789 "compare_classifiers_multiclass_multimetric__label_top10": "Metric Comparison by Label",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

790 "compare_classifiers_performance_from_prob": "Label Metric Comparison by Probability",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

791 }

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

792 for img in imgs:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

793 b64 = encode_image_to_base64(str(img))

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

794 default_title = img.stem.replace("_", " ").title()

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

795 img_title = custom_titles.get(img.stem, default_title)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

796 html_section += (

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

797 f"<h2 style='text-align: center;'>{img_title}</h2>"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

798 f'<div class="plot" style="margin-bottom:20px;text-align:center;">'

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

799 f'<img src="data:image/png;base64,{b64}" '

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

800 f'style="max-width:90%;max-height:600px;border:1px solid #ddd;" />'

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

801 f"</div>"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

802 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

803 return html_section

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

804

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

805 tab1_content = config_html + metrics_html

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

806

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

807 tab2_content = train_val_metrics_html + render_img_section(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

808 "Training and Validation Visualizations",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

809 train_viz_dir,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

810 output_type,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

811 exclude_names={

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

812 "compare_classifiers_performance_from_prob.png",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

813 "roc_curves_from_prediction_statistics.png",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

814 "precision_recall_curves_from_prediction_statistics.png",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

815 "precision_recall_curve.png",

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

816 },

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

817 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

818

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

819 # --- Predictions vs Ground Truth table (REGRESSION ONLY) ---

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

820 preds_section = ""

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

821 parquet_path = exp_dir / PREDICTIONS_PARQUET_FILE_NAME

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

822 if output_type == "regression" and parquet_path.exists():

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

823 try:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

824 # 1) load predictions from Parquet

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

825 df_preds = pd.read_parquet(parquet_path).reset_index(drop=True)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

826 # assume the column containing your model's prediction is named "prediction"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

827 # or contains that substring:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

828 pred_col = next(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

829 (c for c in df_preds.columns if "prediction" in c.lower()),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

830 None,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

831 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

832 if pred_col is None:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

833 raise ValueError("No prediction column found in Parquet output")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

834 df_pred = df_preds[[pred_col]].rename(columns={pred_col: "prediction"})

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

835

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

836 # 2) load ground truth for the test split from prepared CSV

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

837 df_all = pd.read_csv(config["label_column_data_path"])

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

838 df_gt = df_all[df_all[SPLIT_COLUMN_NAME] == 2][

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

839 LABEL_COLUMN_NAME

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

840 ].reset_index(drop=True)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

841 # 3) concatenate side-by-side

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

842 df_table = pd.concat([df_gt, df_pred], axis=1)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

843 df_table.columns = [LABEL_COLUMN_NAME, "prediction"]

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

844

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

845 # 4) render as HTML

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

846 preds_html = df_table.to_html(index=False, classes="predictions-table")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

847 preds_section = (

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

848 "<h2 style='text-align: center;'>Ground Truth vs. Predictions</h2>"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

849 "<div class='preds-controls'>"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

850 "<button id='downloadPredsCsv' class='download-btn'>Download CSV</button>"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

851 "</div>"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

852 "<div class='scroll-rows-30' style='overflow-x:auto; overflow-y:auto; max-height:900px; margin-bottom:20px;'>"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

853 + preds_html

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

854 + "</div>"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

855 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

856 except Exception as e:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

857 logger.warning(f"Could not build Predictions vs GT table: {e}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

858

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

859 tab3_content = test_metrics_html + preds_section

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

860

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

861 if output_type in ("binary", "category") and test_stats_path.exists():

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

862 try:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

863 interactive_plots = build_classification_plots(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

864 str(test_stats_path),

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

865 str(train_stats_path) if train_stats_path.exists() else None,

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

866 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

867 for plot in interactive_plots:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

868 tab3_content += (

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

869 f"<h2 style='text-align: center;'>{plot['title']}</h2>"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

870 f"<div class='plotly-center'>{plot['html']}</div>"

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

871 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

872 logger.info(f"Generated {len(interactive_plots)} interactive Plotly plots")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

873 except Exception as e:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

874 logger.warning(f"Could not generate Plotly plots: {e}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

875

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

876 # Add static TEST PNGs (with default dedupe/exclusions)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

877 tab3_content += render_img_section(

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

878 "Test Visualizations", test_viz_dir, output_type

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

879 )

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

880

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

881 tabbed_html = build_tabbed_html(tab1_content, tab2_content, tab3_content)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

882 modal_html = get_metrics_help_modal()

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

883 html += tabbed_html + modal_html + get_html_closing()

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

884

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

885 try:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

886 with open(report_path, "w") as f:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

887 f.write(html)

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

888 logger.info(f"HTML report generated at: {report_path}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

889 except Exception as e:

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

890 logger.error(f"Failed to write HTML report: {e}")

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

891 raise

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

892

bcfa2e234a80 planemo upload for repository https://github.com/goeckslab/gleam.git commit 96bab8325992d16fcaad8e0a4dc4c62b00e2abc2

goeckslab

parents:

diff changeset

893 return report_path

Mercurial > repos > goeckslab > image_learner

annotate ludwig_backend.py @ 12:bcfa2e234a80 draft