Mercurial > repos > goeckslab > image_learner
comparison image_learner_cli.py @ 20:64872c48a21f draft
planemo upload for repository https://github.com/goeckslab/gleam.git commit d4b122527a2402e43512f9b4bda00c7bff0ec9e9
| author | goeckslab |
|---|---|
| date | Tue, 06 Jan 2026 15:35:11 +0000 |
| parents | bbf30253c99f |
| children | d5c582cf74bc |
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| 19:c460abae83eb | 20:64872c48a21f |
|---|---|
| 160 parser.add_argument( | 160 parser.add_argument( |
| 161 "--image-column", | 161 "--image-column", |
| 162 type=str, | 162 type=str, |
| 163 default=None, | 163 default=None, |
| 164 help="Name of the image column in the metadata file (defaults to 'image_path').", | 164 help="Name of the image column in the metadata file (defaults to 'image_path').", |
| 165 ) | |
| 166 parser.add_argument( | |
| 167 "--sample-id-column", | |
| 168 type=str, | |
| 169 default=None, | |
| 170 help=( | |
| 171 "Optional column name used to group samples during splitting " | |
| 172 "to prevent data leakage (e.g., patient_id or slide_id)." | |
| 173 ), | |
| 165 ) | 174 ) |
| 166 | 175 |
| 167 args = parser.parse_args() | 176 args = parser.parse_args() |
| 168 | 177 |
| 169 argument_checker(args, parser) | 178 argument_checker(args, parser) |