Mercurial > repos > goeckslab > image_learner

diff image_learner_cli.py @ 20:64872c48a21f draft

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planemo upload for repository https://github.com/goeckslab/gleam.git commit d4b122527a2402e43512f9b4bda00c7bff0ec9e9
author goeckslab
date Tue, 06 Jan 2026 15:35:11 +0000
parents bbf30253c99f
children d5c582cf74bc
line wrap: on
line diff
--- a/image_learner_cli.py	Thu Dec 18 16:59:58 2025 +0000
+++ b/image_learner_cli.py	Tue Jan 06 15:35:11 2026 +0000
@@ -163,6 +163,15 @@
         default=None,
         help="Name of the image column in the metadata file (defaults to 'image_path').",
     )
+    parser.add_argument(
+        "--sample-id-column",
+        type=str,
+        default=None,
+        help=(
+            "Optional column name used to group samples during splitting "
+            "to prevent data leakage (e.g., patient_id or slide_id)."
+        ),
+    )
 
     args = parser.parse_args()