Mercurial > repos > goeckslab > ludwig_visualize

annotate ludwig_visualize.xml @ 3:488d878c1c1f draft default tip

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planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit ac3a43f323353716470ccafaadf79d9c38314cff
author goeckslab
date Tue, 18 Mar 2025 22:08:39 +0000
parents a930e68bdffe
children
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dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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1 <tool id="ludwig_visualize" name="Ludwig Visualize" version="@VERSION@" profile="@PROFILE@">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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2 <description>analyzes results and shows in plots</description>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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3 <macros>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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4 <import>ludwig_macros.xml</import>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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5 </macros>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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6 <expand macro="python_requirements_gpu" />
3
488d878c1c1f planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit ac3a43f323353716470ccafaadf79d9c38314cff
goeckslab
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7 <required_files>
488d878c1c1f planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit ac3a43f323353716470ccafaadf79d9c38314cff
goeckslab
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8 <include path="utils.py" />
488d878c1c1f planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit ac3a43f323353716470ccafaadf79d9c38314cff
goeckslab
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9 <include path="ludwig_experiment.py" />
488d878c1c1f planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit ac3a43f323353716470ccafaadf79d9c38314cff
goeckslab
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10 <include path="ludwig_visualize.py" />
488d878c1c1f planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit ac3a43f323353716470ccafaadf79d9c38314cff
goeckslab
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11 </required_files>
0
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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12 <expand macro="macro_stdio" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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13 <version_command>echo "@VERSION@"</version_command>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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14 <command>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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15 <![CDATA[
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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16 #set $visualization = $visualization_selector.visualization.value
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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17
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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18 mkdir -p "./results" &&
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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19 python '$__tool_directory__/ludwig_visualize.py'
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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20 --visualization '$visualization'
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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21 --output_directory "./results"
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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22 #if 'hyperopt_stats_path' in $visualization_selector
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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23 --hyperopt_stats_path '${visualization_selector.hyperopt_stats_path}'
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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24 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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25 #if 'predictions' in $visualization_selector
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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26 #set $pdns = [x.extra_files_path + '/predictions.parquet' for x in $visualization_selector.predictions]
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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27 #set $predictions = "'" + "' '".join($pdns) + "'"
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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28 --predictions $predictions
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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29 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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30 #if 'probabilities' in $visualization_selector
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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31 #set $pbts = [x.extra_files_path + '/predictions.parquet' for x in $visualization_selector.probabilities]
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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32 #set $probabilities = "'" + "' '".join($pbts) + "'"
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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33 --probabilities $probabilities
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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34 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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35 #if 'training_statistics' in $visualization_selector
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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36 #set $ts = []
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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37 #for $x in $visualization_selector.training_statistics
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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38 #if $x.ext != 'json'
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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39 $ts.append($x.extra_files_path + '/training_statistics.json')
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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40 #else
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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41 $ts.append($x.file_name)
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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42 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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43 #end for
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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44 #set $training_statistics = "'" + "' '".join($ts) + "'"
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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45 --training_statistics $training_statistics
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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46 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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47 #if 'test_statistics' in $visualization_selector
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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48 #set $tests = []
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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49 #for $tx in $visualization_selector.test_statistics
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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50 #if $tx.ext != 'json'
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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51 $tests.append($tx.extra_files_path + '/test_statistics.json')
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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52 #else
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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53 $tests.append($tx.file_name)
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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54 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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55 #end for
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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56 #set $test_statistics = "'" + "' '".join($tests) + "'"
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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57 --test_statistics $test_statistics
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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58 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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59 #if 'file_format' in $visualization_selector
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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60 --file_format ${visualization_selector.file_format}
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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61 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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62 #if 'ground_truth_split' in $visualization_selector
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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63 --ground_truth_split ${visualization_selector.ground_truth_split}
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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64 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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65 #if 'output_feature_name' in $visualization_selector and $visualization_selector.output_feature_name
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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66 --output_feature_name '${visualization_selector.output_feature_name}'
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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67 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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68 #if 'model_names' in $visualization_selector and $visualization_selector.model_names
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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69 #set $mns = $visualization_selector.model_names.split(',')
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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70 #set $mns = [x.strip() for x in $mns]
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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71 #set $model_names = "'" + "' '".join($mns) + "'"
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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72 --model_names $model_names
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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73 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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74 #if 'threshold_output_feature_names' in $visualization_selector
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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75 #set $tofns = $visualization_selector.threshold_output_feature_names.split(',')
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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76 #set $tofns = [x.strip() for x in $tofns]
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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77 #set $threshold_output_feature_names = "'" + "' '".join($tofns) + "'"
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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78 --threshold_output_feature_names $threshold_output_feature_names
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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79 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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80 #if 'top_n_classes' in $visualization_selector and $visualization_selector.top_n_classes
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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81 #set $tncs = $visualization_selector.top_n_classes.split(',')
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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82 #set $tncs = [x.strip() for x in $tncs]
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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83 #set $top_n_classes = ' '.join($tncs)
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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84 --top_n_classes $top_n_classes
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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85 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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86 #if 'ground_truth' in $visualization_selector
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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87 --ground_truth '${visualization_selector.ground_truth}'
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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88 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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89 #if 'ground_truth_metadata' in $visualization_selector
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
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90 #if $visualization_selector.ground_truth_metadata.ext == 'json'
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91 --ground_truth_metadata '${visualization_selector.ground_truth_metadata}'
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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92 #else
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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93 --ground_truth_metadata '${visualization_selector.ground_truth_metadata.extra_files_path}/training_set_metadata.json'
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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94 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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95 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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96 #if 'split_file' in $visualization_selector
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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97 --split_file '${visualization_selector.split_file}'
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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98 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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99 #if 'top_k' in $visualization_selector and $visualization_selector.top_k
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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100 --top_k ${visualization_selector.top_k}
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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101 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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102 #if 'labels_limit' in $visualization_selector
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103 --labels_limit ${visualization_selector.labels_limit}
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104 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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105 #if 'subset' in $visualization_selector
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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106 --subset ${visualization_selector.subset.value}
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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107 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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108 #if 'metrics' in $visualization_selector and $visualization_selector.metrics
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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109 #set $mtcs = $visualization_selector.metrics.split(',')
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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110 #set $mtcs = [x.strip() for x in $mtcs]
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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111 #set $metrics = "'" + "' '".join($mtcs) + "'"
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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112 --metrics ${visualization_selector.metrics}
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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113 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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114 #if 'positive_label' in $visualization_selector
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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115 --positive_label ${visualization_selector.positive_label}
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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116 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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117 #if 'normalize' in $visualization_selector and $visualization_selector.normalize
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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118 --normalize
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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119 #end if
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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120 && echo "Done!"
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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121 ]]>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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122 </command>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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123 <configfiles>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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124 <inputs name="inputs" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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125 </configfiles>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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126 <inputs>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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127 <conditional name="visualization_selector">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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128 <param name="visualization" type="select" label="Type of visualization">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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129 <option value="compare_performance">compare_performance</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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130 <option value="compare_classifiers_performance_from_prob">compare_classifiers_performance_from_prob</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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131 <option value="compare_classifiers_performance_from_pred">compare_classifiers_performance_from_pred</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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132 <option value="compare_classifiers_performance_subset">compare_classifiers_performance_subset</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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133 <option value="compare_classifiers_performance_changing_k">compare_classifiers_performance_changing_k</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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134 <option value="compare_classifiers_multiclass_multimetric">compare_classifiers_multiclass_multimetric</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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135 <option value="compare_classifiers_predictions">compare_classifiers_predictions</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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136 <option value="compare_classifiers_predictions_distribution">compare_classifiers_predictions_distribution</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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137 <option value="confidence_thresholding">confidence_thresholding</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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138 <option value="confidence_thresholding_data_vs_acc">confidence_thresholding_data_vs_acc</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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139 <option value="confidence_thresholding_data_vs_acc_subset">confidence_thresholding_data_vs_acc_subset</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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140 <option value="confidence_thresholding_data_vs_acc_subset_per_class">confidence_thresholding_data_vs_acc_subset_per_class</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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141 <option value="confidence_thresholding_2thresholds_2d">confidence_thresholding_2thresholds_2d</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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142 <option value="confidence_thresholding_2thresholds_3d">confidence_thresholding_2thresholds_3d</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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143 <option value="binary_threshold_vs_metric">binary_threshold_vs_metric</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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144 <option value="roc_curves">roc_curves</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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145 <option value="roc_curves_from_test_statistics">roc_curves_from_test_statistics</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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146 <option value="calibration_1_vs_all">calibration_1_vs_all</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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147 <option value="calibration_multiclass">calibration_multiclass</option>
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148 <option value="confusion_matrix">confusion_matrix</option>
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149 <option value="frequency_vs_f1">frequency_vs_f1</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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150 <option value="learning_curves">learning_curves</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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151 <option value="hyperopt_report" selected="true">hyperopt_report</option>
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152 <option value="hyperopt_hiplot">hyperopt_hiplot</option>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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153 </param>
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154 <when value="compare_performance">
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155 <expand macro="visualize_test_statistics" />
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156 <expand macro="visualize_output_feature_name" />
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157 <expand macro="visualize_model_names" />
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158 <expand macro="visualize_file_format" />
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159 </when>
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160 <when value="compare_classifiers_performance_from_prob">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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161 <expand macro="visualize_probabilities" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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162 <expand macro="visualize_ground_truth" />
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163 <expand macro="visualize_ground_truth_split" />
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164 <expand macro="visualize_split_file" />
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165 <expand macro="visualize_ground_truth_metadata" />
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166 <expand macro="visualize_output_feature_name" />
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167 </when>
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168 <when value="compare_classifiers_performance_from_pred">
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169 <expand macro="visualize_predictions" />
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170 <expand macro="visualize_ground_truth" />
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171 <expand macro="visualize_ground_truth_split" />
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172 <expand macro="visualize_split_file" />
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173 <expand macro="visualize_ground_truth_metadata" />
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174 <expand macro="visualize_output_feature_name" />
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175 </when>
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176 <when value="compare_classifiers_performance_subset">
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177 <expand macro="visualize_probabilities" />
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178 <expand macro="visualize_ground_truth" />
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179 <expand macro="visualize_ground_truth_split" />
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180 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
181 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
182 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
183 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
184 <when value="compare_classifiers_performance_changing_k">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
185 <expand macro="visualize_probabilities" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
186 <expand macro="visualize_ground_truth" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
187 <expand macro="visualize_ground_truth_split" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
188 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
189 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
190 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
191 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
192 <when value="compare_classifiers_multiclass_multimetric">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
193 <expand macro="visualize_test_statistics" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
194 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
195 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
196 <expand macro="visualize_top_n_classes" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
197 <expand macro="visualize_model_names" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
198 <expand macro="visualize_file_format" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
199 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
200 <when value="compare_classifiers_predictions">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
201 <expand macro="visualize_predictions" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
202 <expand macro="visualize_ground_truth" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
203 <expand macro="visualize_ground_truth_split" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
204 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
205 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
206 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
207 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
208 <when value="compare_classifiers_predictions_distribution">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
209 <expand macro="visualize_predictions" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
210 <expand macro="visualize_ground_truth" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
211 <expand macro="visualize_ground_truth_split" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
212 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
213 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
214 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
215 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
216 <when value="confidence_thresholding">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
217 <expand macro="visualize_probabilities" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
218 <expand macro="visualize_ground_truth" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
219 <expand macro="visualize_ground_truth_split" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
220 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
221 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
222 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
223 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
224 <when value="confidence_thresholding_data_vs_acc">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
225 <expand macro="visualize_probabilities" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
226 <expand macro="visualize_ground_truth" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
227 <expand macro="visualize_ground_truth_split" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
228 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
229 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
230 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
231 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
232 <when value="confidence_thresholding_data_vs_acc_subset">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
233 <expand macro="visualize_probabilities" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
234 <expand macro="visualize_ground_truth" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
235 <expand macro="visualize_ground_truth_split" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
236 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
237 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
238 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
239 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
240 <when value="confidence_thresholding_data_vs_acc_subset_per_class">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
241 <expand macro="visualize_probabilities" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
242 <expand macro="visualize_ground_truth" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
243 <expand macro="visualize_ground_truth_split" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
244 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
245 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
246 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
247 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
248 <when value="confidence_thresholding_2thresholds_2d">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
249 <expand macro="visualize_probabilities" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
250 <expand macro="visualize_ground_truth" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
251 <expand macro="visualize_ground_truth_split" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
252 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
253 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
254 <expand macro="visualize_threshold_output_feature_names" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
255 <expand macro="visualize_labels_limit" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
256 <expand macro="visualize_model_names" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
257 <expand macro="visualize_file_format" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
258 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
259 <when value="confidence_thresholding_2thresholds_3d">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
260 <expand macro="visualize_probabilities" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
261 <expand macro="visualize_ground_truth" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
262 <expand macro="visualize_ground_truth_split" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
263 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
264 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
265 <expand macro="visualize_threshold_output_feature_names" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
266 <expand macro="visualize_labels_limit" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
267 <expand macro="visualize_file_format" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
268 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
269 <when value="binary_threshold_vs_metric">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
270 <expand macro="visualize_probabilities" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
271 <expand macro="visualize_ground_truth" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
272 <expand macro="visualize_ground_truth_split" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
273 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
274 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
275 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
276 <expand macro="visualize_metrics" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
277 <expand macro="visualize_positive_label" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
278 <expand macro="visualize_model_names" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
279 <expand macro="visualize_file_format" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
280 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
281 <when value="roc_curves">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
282 <expand macro="visualize_probabilities" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
283 <expand macro="visualize_ground_truth" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
284 <expand macro="visualize_ground_truth_split" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
285 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
286 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
287 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
288 <expand macro="visualize_positive_label" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
289 <expand macro="visualize_model_names" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
290 <expand macro="visualize_file_format" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
291 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
292 <when value="roc_curves_from_test_statistics">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
293 <expand macro="visualize_test_statistics" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
294 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
295 <expand macro="visualize_model_names" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
296 <expand macro="visualize_file_format" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
297 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
298 <when value="calibration_1_vs_all">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
299 <expand macro="visualize_probabilities" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
300 <expand macro="visualize_ground_truth" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
301 <expand macro="visualize_ground_truth_split" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
302 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
303 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
304 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
305 <expand macro="visualize_ground_truth_apply_idx" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
306 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
307 <when value="calibration_multiclass">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
308 <expand macro="visualize_probabilities" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
309 <expand macro="visualize_ground_truth" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
310 <expand macro="visualize_ground_truth_split" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
311 <expand macro="visualize_split_file" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
312 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
313 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
314 <expand macro="visualize_labels_limit" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
315 <expand macro="visualize_model_names" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
316 <expand macro="visualize_file_format" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
317 <expand macro="visualize_ground_truth_apply_idx" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
318 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
319 <when value="confusion_matrix">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
320 <expand macro="visualize_test_statistics" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
321 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
322 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
323 <expand macro="visualize_top_n_classes" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
324 <expand macro="visualize_normalize" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
325 <expand macro="visualize_model_names" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
326 <expand macro="visualize_file_format" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
327 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
328 <when value="frequency_vs_f1">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
329 <expand macro="visualize_test_statistics" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
330 <expand macro="visualize_ground_truth_metadata" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
331 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
332 <expand macro="visualize_top_n_classes" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
333 <expand macro="visualize_model_names" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
334 <expand macro="visualize_file_format" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
335 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
336 <when value="learning_curves">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
337 <expand macro="visualize_training_statistics" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
338 <expand macro="visualize_output_feature_name" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
339 <expand macro="visualize_model_names" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
340 <expand macro="visualize_file_format" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
341 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
342 <when value="hyperopt_report">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
343 <expand macro="visualize_hyperopt_stats_path" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
344 <expand macro="visualize_file_format" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
345 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
346 <when value="hyperopt_hiplot">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
347 <expand macro="visualize_hyperopt_stats_path" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
348 </when>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
349 </conditional>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
350 </inputs>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
351 <outputs>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
352 <collection type="list" name="output" label="${tool.name} ${visualization_selector.visualization} on ${on_string}">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
353 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.pdf" format="pdf" directory="results" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
354 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.png" format="png" directory="results" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
355 </collection>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
356 </outputs>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
357 <tests>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
358 <test>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
359 <conditional name="visualization_selector">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
360 <param name="visualization" value="hyperopt_report" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
361 <param name="hyperopt_stats_path" value="temperature_hyperopt_statistics.json" ftype="json" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
362 </conditional>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
363 <output_collection name="output" type="list">
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
364 <element name="hyperopt_trainer.learning_rate" file="temp_hyperopt_training.learning_rate.pdf" ftype="pdf" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff changeset
365 </output_collection>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
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366 </test>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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367 </tests>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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368 <help>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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369 <![CDATA[
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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370 **What it does**
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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371 This tool supports various of visualizations from Ludwig.
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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372
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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373
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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374 **Input**
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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375 Report output from ludwig train/experiment/evaluate/predict tool.
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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376
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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377
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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378 **Output**
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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379 PNG or PDF.
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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380
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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381
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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382 ]]>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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383 </help>
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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384 <expand macro="macro_citations" />
dceb8493730d planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
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385 </tool>