Mercurial > repos > goeckslab > mesmer

comparison mesmer.xml @ 1:02abff468d60 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
author goeckslab
date Thu, 10 Nov 2022 20:38:34 +0000
parents 53240d7c1fc5
children 187918c47051
comparison
equal deleted inserted replaced
0:53240d7c1fc5 1:02abff468d60
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 7
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 <expand macro="stdio"/>
9 <expand macro="version_cmd"/> 10 <expand macro="version_cmd"/>
10 11
11 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
12 ln -s '$nuclear_image' 'input.tif' && 13 ln -s '$nuclear_image' 'input.tif' &&
13 @CMD_BEGIN@ 14 @CMD_BEGIN@
51 </outputs> 52 </outputs>
52 <tests> 53 <tests>
53 <test> 54 <test>
54 <param name="nuclear_image" value="test.tiff" /> 55 <param name="nuclear_image" value="test.tiff" />
55 <param name="compartment" value="nuclear" /> 56 <param name="compartment" value="nuclear" />
56 <param name="membrane_select.membrane_segment" value="False" /> 57 <param name="membrane_segment" value="False" />
57 <param name="image_mmp" value="0.65" /> 58 <param name="image_mpp" value="0.65" />
58 <param name="squeeze" value="--squeeze" /> 59 <param name="squeeze" value="--squeeze" />
59 <output name="mask" ftype="tiff"> 60 <output name="mask" ftype="tiff">
60 <assert_contents> 61 <assert_contents>
61 <has_size value="360000" delta="1000" /> 62 <has_size value="360000" delta="1000" />
62 </assert_contents> 63 </assert_contents>