Mercurial > repos > goeckslab > multimodal_learner

annotate report_utils.py @ 8:a48e750cfd25 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
author goeckslab
date Fri, 30 Jan 2026 14:20:49 +0000
parents 375c36923da1
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1 import base64
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
2 import html
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
3 import json
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
4 import logging
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
5 import os
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
6 import platform
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
7 import shutil
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
8 import sys
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
9 import tempfile
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
10 from datetime import datetime
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
11 from typing import Any, Dict, List, Optional
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
12
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
13 import numpy as np
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
14 import pandas as pd
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
15 import yaml
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
16 from utils import verify_outputs
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
17
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
18 logger = logging.getLogger(__name__)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
19
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
20
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
21 def _escape(s: Any) -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
22 return html.escape(str(s))
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
23
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
24
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
25 def _write_predictor_path(predictor):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
26 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
27 pred_path = getattr(predictor, "path", None)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
28 if pred_path:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
29 with open("predictor_path.txt", "w") as pf:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
30 pf.write(str(pred_path))
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
31 logger.info("Wrote predictor path → predictor_path.txt")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
32 return pred_path
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
33 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
34 logger.warning("Could not write predictor_path.txt")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
35 return None
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
36
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
37
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
38 def _replace_local_backbone_strings(obj: Any, replacements: Optional[dict]) -> Any:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
39 if not replacements:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
40 return obj
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
41 if isinstance(obj, str):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
42 out = obj
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
43 for needle, repl in replacements.items():
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
44 if repl:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
45 out = out.replace(needle, str(repl))
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
46 return out
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
47 if isinstance(obj, dict):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
48 return {k: _replace_local_backbone_strings(v, replacements) for k, v in obj.items()}
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
49 if isinstance(obj, list):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
50 return [_replace_local_backbone_strings(v, replacements) for v in obj]
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
51 if isinstance(obj, tuple):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
52 return tuple(_replace_local_backbone_strings(v, replacements) for v in obj)
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
53 return obj
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
54
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
55
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
56 def _copy_config_if_available(
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
57 pred_path: Optional[str],
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
58 output_config: Optional[str],
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
59 replacements: Optional[dict] = None,
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
60 cfg_yaml: Optional[dict] = None,
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
61 ):
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
62 if not output_config:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
63 return
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
64 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
65 config_yaml_path = os.path.join(pred_path, "config.yaml") if pred_path else None
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
66 if config_yaml_path and os.path.isfile(config_yaml_path):
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
67 try:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
68 if isinstance(cfg_yaml, dict) and cfg_yaml:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
69 cfg_raw = cfg_yaml
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
70 else:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
71 with open(config_yaml_path, "r") as cfg_in:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
72 cfg_raw = yaml.safe_load(cfg_in) or {}
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
73 cfg_sanitized = _replace_local_backbone_strings(cfg_raw, replacements)
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
74 with open(output_config, "w") as cfg_out:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
75 yaml.safe_dump(cfg_sanitized, cfg_out, sort_keys=False)
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
76 logger.info(f"Wrote AutoGluon config → {output_config}")
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
77 except Exception as e:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
78 logger.warning(f"Failed to sanitize config.yaml; copying raw file instead: {e}")
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
79 shutil.copy2(config_yaml_path, output_config)
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
80 logger.info(f"Wrote AutoGluon config → {output_config}")
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
81 else:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
82 with open(output_config, "w") as cfg_out:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
83 cfg_out.write("# config.yaml not found for this run\n")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
84 logger.warning(f"AutoGluon config.yaml not found; created placeholder at {output_config}")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
85 except Exception as e:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
86 logger.error(f"Failed to write config output '{output_config}': {e}")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
87 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
88 with open(output_config, "w") as cfg_out:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
89 cfg_out.write(f"# Failed to copy config.yaml: {e}\n")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
90 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
91 pass
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
92
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
93
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
94 def _load_config_yaml(args, predictor) -> dict:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
95 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
96 Load config.yaml either from the predictor path or the exported output_config.
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
97 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
98 candidates = []
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
99 pred_path = getattr(predictor, "path", None)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
100 if pred_path:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
101 cfg_path = os.path.join(pred_path, "config.yaml")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
102 if os.path.isfile(cfg_path):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
103 candidates.append(cfg_path)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
104 if args.output_config and os.path.isfile(args.output_config):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
105 candidates.append(args.output_config)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
106
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
107 for p in candidates:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
108 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
109 with open(p, "r") as f:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
110 return yaml.safe_load(f) or {}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
111 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
112 continue
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
113 return {}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
114
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
115
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
116 def _is_local_checkpoint(val: Optional[str]) -> bool:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
117 return isinstance(val, str) and val.startswith("local://")
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
118
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
119
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
120 def _read_checkpoint_from_cfg(cfg: dict, model_key: str) -> Optional[str]:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
121 if not isinstance(cfg, dict):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
122 return None
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
123 model_cfg = cfg.get("model", {})
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
124 if not isinstance(model_cfg, dict):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
125 return None
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
126 block = model_cfg.get(model_key)
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
127 if isinstance(block, str):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
128 return block
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
129 if isinstance(block, dict):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
130 for k in ("checkpoint_name", "model_name", "name"):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
131 val = block.get(k)
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
132 if val:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
133 return val
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
134 return None
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
135
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
136
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
137 def _read_checkpoint_from_hparams(hparams: Optional[dict], model_key: str) -> Optional[str]:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
138 if not isinstance(hparams, dict):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
139 return None
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
140 model_block = hparams.get("model", {})
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
141 if isinstance(model_block, dict):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
142 block = model_block.get(model_key)
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
143 if isinstance(block, str):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
144 return block
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
145 if isinstance(block, dict):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
146 for k in ("checkpoint_name", "model_name", "name"):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
147 val = block.get(k)
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
148 if val:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
149 return val
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
150 for k in ("checkpoint_name", "model_name", "name"):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
151 dotted = hparams.get(f"model.{model_key}.{k}")
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
152 if dotted:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
153 return dotted
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
154 return None
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
155
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
156
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
157 def _resolve_backbone_choice(cfg: dict, ag_config: Optional[dict], args, model_key: str, arg_attr: str) -> Optional[str]:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
158 candidates = [
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
159 _read_checkpoint_from_cfg(cfg, model_key),
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
160 _read_checkpoint_from_hparams((ag_config or {}).get("hyperparameters"), model_key),
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
161 getattr(args, arg_attr, None),
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
162 ]
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
163 for val in candidates:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
164 if val and not _is_local_checkpoint(val):
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
165 return str(val)
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
166 return None
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
167
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
168
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
169 def _build_backbone_replacements(cfg: dict, ag_config: Optional[dict], args) -> dict:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
170 replacements = {}
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
171 text_choice = _resolve_backbone_choice(cfg, ag_config, args, "hf_text", "backbone_text")
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
172 image_choice = _resolve_backbone_choice(cfg, ag_config, args, "timm_image", "backbone_image")
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
173 if text_choice:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
174 replacements["local://hf_text"] = text_choice
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
175 if image_choice:
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
176 replacements["local://timm_image"] = image_choice
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
177 return replacements
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
178
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
179
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
180 def _summarize_config(cfg: dict, args, ag_config: Optional[dict] = None) -> List[tuple[str, str]]:
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
181 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
182 Build rows describing model components and key hyperparameters from a loaded config.yaml.
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
183 Falls back to AutoGluon hyperparameters and CLI args when config values are missing.
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
184 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
185 rows: List[tuple[str, str]] = []
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
186 model_cfg = cfg.get("model", {}) if isinstance(cfg, dict) else {}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
187 names = model_cfg.get("names") or []
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
188 if names:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
189 rows.append(("Model components", ", ".join(names)))
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
190
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
191 # Tabular backbone with data types
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
192 tabular_val = "—"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
193 for k, v in model_cfg.items():
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
194 if k in ("names", "hf_text", "timm_image"):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
195 continue
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
196 if isinstance(v, dict) and "data_types" in v:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
197 dtypes = v.get("data_types") or []
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
198 if any(t in ("categorical", "numerical") for t in dtypes):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
199 dt_str = ", ".join(dtypes) if dtypes else ""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
200 tabular_val = f"{k} ({dt_str})" if dt_str else k
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
201 break
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
202 rows.append(("Tabular backbone", tabular_val))
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
203
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
204 image_val = _resolve_backbone_choice(cfg, ag_config, args, "timm_image", "backbone_image")
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
205 rows.append(("Image backbone", image_val or "—"))
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
206
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
207 text_val = _resolve_backbone_choice(cfg, ag_config, args, "hf_text", "backbone_text")
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
208 rows.append(("Text backbone", text_val or "—"))
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
209
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
210 fusion_val = "—"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
211 for k in model_cfg.keys():
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
212 if str(k).startswith("fusion"):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
213 fusion_val = k
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
214 break
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
215 rows.append(("Fusion backbone", fusion_val))
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
216
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
217 # Optimizer block
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
218 optim_cfg = cfg.get("optim", {}) if isinstance(cfg, dict) else {}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
219 optim_map = [
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
220 ("optim_type", "Optimizer"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
221 ("lr", "Learning rate"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
222 ("weight_decay", "Weight decay"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
223 ("lr_decay", "LR decay"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
224 ("max_epochs", "Max epochs"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
225 ("max_steps", "Max steps"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
226 ("patience", "Early-stop patience"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
227 ("check_val_every_n_epoch", "Val check every N epochs"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
228 ("top_k", "Top K checkpoints"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
229 ("top_k_average_method", "Top K averaging"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
230 ]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
231 for key, label in optim_map:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
232 if key in optim_cfg:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
233 rows.append((label, optim_cfg[key]))
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
234
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
235 env_cfg = cfg.get("env", {}) if isinstance(cfg, dict) else {}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
236 if "batch_size" in env_cfg:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
237 rows.append(("Global batch size", env_cfg["batch_size"]))
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
238
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
239 return rows
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
240
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
241
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
242 def write_outputs(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
243 args,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
244 predictor,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
245 problem_type: str,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
246 eval_results: dict,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
247 data_ctx: dict,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
248 raw_folds=None,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
249 ag_folds=None,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
250 raw_metrics_std=None,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
251 ag_by_split_std=None,
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
252 ag_config: Optional[dict] = None,
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
253 ):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
254 from plot_logic import (
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
255 build_summary_html,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
256 build_test_html_and_plots,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
257 build_feature_html,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
258 assemble_full_html_report,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
259 build_train_html_and_plots,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
260 )
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
261 from autogluon.multimodal import MultiModalPredictor
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
262 from metrics_logic import aggregate_metrics
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
263
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
264 raw_metrics = eval_results.get("raw_metrics", {})
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
265 ag_by_split = eval_results.get("ag_eval", {})
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
266 fit_summary_obj = eval_results.get("fit_summary")
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
267 roc_curves = eval_results.get("roc_curves")
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
268
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
269 cfg_yaml = _load_config_yaml(args, predictor)
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
270 backbone_replacements = _build_backbone_replacements(cfg_yaml, ag_config, args)
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
271 fit_summary_obj = _replace_local_backbone_strings(fit_summary_obj, backbone_replacements)
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
272
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
273 df_train = data_ctx.get("train")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
274 df_val = data_ctx.get("val")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
275 df_test_internal = data_ctx.get("test_internal")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
276 df_test_external = data_ctx.get("test_external")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
277 df_test = df_test_external if df_test_external is not None else df_test_internal
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
278 df_train_full = df_train if df_val is None else pd.concat([df_train, df_val], ignore_index=True)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
279
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
280 # Aggregate folds if provided without stds
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
281 if raw_folds and raw_metrics_std is None:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
282 raw_metrics, raw_metrics_std = aggregate_metrics(raw_folds)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
283 if ag_folds and ag_by_split_std is None:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
284 ag_by_split, ag_by_split_std = aggregate_metrics(ag_folds)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
285
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
286 # Inject AG eval into raw metrics for visibility
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
287 def _inject_ag(src: dict, dst: dict):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
288 for k, v in (src or {}).items():
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
289 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
290 dst[f"AG_{k}"] = float(v)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
291 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
292 dst[f"AG_{k}"] = v
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
293 if "Train" in raw_metrics and "Train" in ag_by_split:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
294 _inject_ag(ag_by_split["Train"], raw_metrics["Train"])
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
295 if "Validation" in raw_metrics and "Validation" in ag_by_split:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
296 _inject_ag(ag_by_split["Validation"], raw_metrics["Validation"])
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
297 if "Test" in raw_metrics and "Test" in ag_by_split:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
298 _inject_ag(ag_by_split["Test"], raw_metrics["Test"])
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
299
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
300 # JSON
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
301 with open(args.output_json, "w") as f:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
302 json.dump(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
303 {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
304 "train": raw_metrics.get("Train", {}),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
305 "val": raw_metrics.get("Validation", {}),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
306 "test": raw_metrics.get("Test", {}),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
307 "test_external": raw_metrics.get("Test (external)", {}),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
308 "ag_eval": ag_by_split,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
309 "ag_eval_std": ag_by_split_std,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
310 "fit_summary": fit_summary_obj,
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
311 "roc_curves": roc_curves,
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
312 "problem_type": problem_type,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
313 "predictor_path": getattr(predictor, "path", None),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
314 "threshold": args.threshold,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
315 "threshold_test": args.threshold,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
316 "preset": args.preset,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
317 "eval_metric": args.eval_metric,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
318 "folds": {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
319 "raw_folds": raw_folds,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
320 "ag_folds": ag_folds,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
321 "summary_mean": raw_metrics if raw_folds else None,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
322 "summary_std": raw_metrics_std,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
323 "ag_summary_mean": ag_by_split,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
324 "ag_summary_std": ag_by_split_std,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
325 },
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
326 },
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
327 f,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
328 indent=2,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
329 default=str,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
330 )
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
331 logger.info(f"Wrote full JSON → {args.output_json}")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
332
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
333 # HTML report assembly
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
334 label_col = args.target_column
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
335
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
336 class_balance_block_html = build_class_balance_html(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
337 df_train=df_train,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
338 label_col=label_col,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
339 df_val=df_val,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
340 df_test=df_test,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
341 )
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
342 summary_perf_table_html = build_model_performance_summary_table(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
343 train_scores=raw_metrics.get("Train", {}),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
344 val_scores=raw_metrics.get("Validation", {}),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
345 test_scores=raw_metrics.get("Test", {}),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
346 include_test=True,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
347 title=None,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
348 show_title=False,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
349 )
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
350
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
351 config_rows = _summarize_config(cfg_yaml, args, ag_config=ag_config)
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
352 threshold_rows = []
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
353 if problem_type == "binary" and args.threshold is not None:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
354 threshold_rows.append(("Decision threshold (Test)", f"{float(args.threshold):.3f}"))
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
355 extra_run_rows = [
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
356 ("Target column", label_col),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
357 ("Model evaluation metric", args.eval_metric or "AutoGluon default"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
358 ("Experiment quality", args.preset or "AutoGluon default"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
359 ] + threshold_rows + config_rows
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
360
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
361 summary_html = build_summary_html(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
362 predictor=predictor,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
363 df_train=df_train_full,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
364 df_val=df_val,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
365 df_test=df_test,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
366 label_column=label_col,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
367 extra_run_rows=extra_run_rows,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
368 class_balance_html=class_balance_block_html,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
369 perf_table_html=summary_perf_table_html,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
370 )
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
371
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
372 train_tab_perf_html = build_model_performance_summary_table(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
373 train_scores=raw_metrics.get("Train", {}),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
374 val_scores=raw_metrics.get("Validation", {}),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
375 test_scores=raw_metrics.get("Test", {}),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
376 include_test=False,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
377 title=None,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
378 show_title=False,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
379 )
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
380
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
381 train_html = build_train_html_and_plots(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
382 predictor=predictor,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
383 problem_type=problem_type,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
384 df_train=df_train,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
385 df_val=df_val,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
386 label_column=label_col,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
387 tmpdir=tempfile.mkdtemp(),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
388 seed=int(args.random_seed),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
389 perf_table_html=train_tab_perf_html,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
390 threshold=args.threshold,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
391 )
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
392
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
393 test_html_template, plots = build_test_html_and_plots(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
394 predictor,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
395 problem_type,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
396 df_test,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
397 label_col,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
398 tempfile.mkdtemp(),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
399 threshold=args.threshold,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
400 )
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
401
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
402 def _fmt_val(v):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
403 if isinstance(v, (int, np.integer)):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
404 return f"{int(v)}"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
405 if isinstance(v, (float, np.floating)):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
406 return f"{v:.6f}"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
407 return str(v)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
408
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
409 test_scores = raw_metrics.get("Test", {})
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
410 # Drop AutoGluon-injected ROC AUC line from the Test Performance Summary
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
411 filtered_test_scores = {k: v for k, v in test_scores.items() if k != "AG_roc_auc"}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
412 metric_rows = "".join(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
413 f"<tr><td>{k.replace('_',' ').replace('(TNR)','(TNR)').replace('(Sensitivity/TPR)', '(Sensitivity/TPR)')}</td>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
414 f"<td>{_fmt_val(v)}</td></tr>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
415 for k, v in filtered_test_scores.items()
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
416 )
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
417 test_html_filled = test_html_template.format(metric_rows)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
418
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
419 is_multimodal = isinstance(predictor, MultiModalPredictor)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
420 leaderboard_html = "" if is_multimodal else build_leaderboard_html(predictor)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
421 inputs_html = ""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
422 ignored_features_html = "" if is_multimodal else build_ignored_features_html(predictor, df_train_full)
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
423 presets_hparams_html = build_presets_hparams_html(predictor, backbone_replacements)
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
424 notices: List[str] = []
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
425 if args.threshold is not None and problem_type == "binary":
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
426 notices.append(f"Using decision threshold = {float(args.threshold):.3f} on Test.")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
427 warnings_html = build_warnings_html([], notices)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
428 repro_html = build_reproducibility_html(args, {}, getattr(predictor, "path", None))
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
429
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
430 transparency_blocks = "\n".join(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
431 [
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
432 leaderboard_html,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
433 inputs_html,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
434 ignored_features_html,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
435 presets_hparams_html,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
436 warnings_html,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
437 repro_html,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
438 ]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
439 )
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
440
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
441 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
442 feature_text = build_feature_html(predictor, df_test, label_col, tempfile.mkdtemp(), args.random_seed) if df_test is not None else ""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
443 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
444 feature_text = "<p>Feature analysis unavailable for this model.</p>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
445
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
446 full_html = assemble_full_html_report(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
447 summary_html,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
448 train_html,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
449 test_html_filled,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
450 plots,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
451 feature_text + transparency_blocks,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
452 )
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
453 with open(args.output_html, "w") as f:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
454 f.write(full_html)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
455 logger.info(f"Wrote HTML report → {args.output_html}")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
456
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
457 pred_path = _write_predictor_path(predictor)
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
458 _copy_config_if_available(
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
459 pred_path,
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
460 args.output_config,
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
461 backbone_replacements,
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
462 cfg_yaml=cfg_yaml,
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
463 )
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
464
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
465 outputs_to_check = [
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
466 (args.output_json, "JSON results"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
467 (args.output_html, "HTML report"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
468 ]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
469 if args.output_config:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
470 outputs_to_check.append((args.output_config, "AutoGluon config"))
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
471 verify_outputs(outputs_to_check)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
472
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
473
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
474 def get_html_template() -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
475 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
476 Returns the opening HTML, <head> (with CSS/JS), and opens <body> + .container.
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
477 Includes:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
478 - Base styling for layout and tables
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
479 - Sortable table headers with 3-state arrows (none ⇅, asc ↑, desc ↓)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
480 - A scroll helper class (.scroll-rows-30) that approximates ~30 visible rows
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
481 - A guarded script so initializing runs only once even if injected twice
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
482 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
483 return """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
484 <!DOCTYPE html>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
485 <html>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
486 <head>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
487 <meta charset="UTF-8">
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
488 <title>Galaxy-Ludwig Report</title>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
489 <style>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
490 body {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
491 font-family: Arial, sans-serif;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
492 margin: 0;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
493 padding: 20px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
494 background-color: #f4f4f4;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
495 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
496 .container {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
497 max-width: 1200px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
498 margin: auto;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
499 background: white;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
500 padding: 20px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
501 box-shadow: 0 0 10px rgba(0, 0, 0, 0.1);
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
502 overflow-x: auto;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
503 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
504 h1 {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
505 text-align: center;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
506 color: #333;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
507 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
508 h2 {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
509 border-bottom: 2px solid #4CAF50;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
510 color: #4CAF50;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
511 padding-bottom: 5px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
512 margin-top: 28px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
513 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
514
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
515 /* baseline table setup */
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
516 table {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
517 border-collapse: collapse;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
518 margin: 20px 0;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
519 width: 100%;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
520 table-layout: fixed;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
521 background: #fff;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
522 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
523 table, th, td {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
524 border: 1px solid #ddd;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
525 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
526 th, td {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
527 padding: 10px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
528 text-align: center;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
529 vertical-align: middle;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
530 word-break: break-word;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
531 white-space: normal;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
532 overflow-wrap: anywhere;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
533 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
534 th {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
535 background-color: #4CAF50;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
536 color: white;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
537 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
538
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
539 .plot {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
540 text-align: center;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
541 margin: 20px 0;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
542 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
543 .plot img {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
544 max-width: 100%;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
545 height: auto;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
546 border: 1px solid #ddd;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
547 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
548
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
549 /* -------------------
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
550 sortable columns (3-state: none ⇅, asc ↑, desc ↓)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
551 ------------------- */
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
552 table.performance-summary th.sortable {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
553 cursor: pointer;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
554 position: relative;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
555 user-select: none;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
556 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
557 /* default icon space */
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
558 table.performance-summary th.sortable::after {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
559 content: '⇅';
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
560 position: absolute;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
561 right: 12px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
562 top: 50%;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
563 transform: translateY(-50%);
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
564 font-size: 0.8em;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
565 color: #eaf5ea; /* light on green */
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
566 text-shadow: 0 0 1px rgba(0,0,0,0.15);
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
567 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
568 /* three states override the default */
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
569 table.performance-summary th.sortable.sorted-none::after { content: '⇅'; color: #eaf5ea; }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
570 table.performance-summary th.sortable.sorted-asc::after { content: '↑'; color: #ffffff; }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
571 table.performance-summary th.sortable.sorted-desc::after { content: '↓'; color: #ffffff; }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
572
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
573 /* show ~30 rows with a scrollbar (tweak if you want) */
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
574 .scroll-rows-30 {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
575 max-height: 900px; /* ~30 rows depending on row height */
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
576 overflow-y: auto; /* vertical scrollbar (“sidebar”) */
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
577 overflow-x: auto;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
578 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
579
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
580 /* Tabs + Help button (used by build_tabbed_html) */
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
581 .tabs {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
582 display: flex;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
583 align-items: center;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
584 border-bottom: 2px solid #ccc;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
585 margin-bottom: 1rem;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
586 gap: 6px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
587 flex-wrap: wrap;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
588 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
589 .tab {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
590 padding: 10px 20px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
591 cursor: pointer;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
592 border: 1px solid #ccc;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
593 border-bottom: none;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
594 background: #f9f9f9;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
595 margin-right: 5px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
596 border-top-left-radius: 8px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
597 border-top-right-radius: 8px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
598 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
599 .tab.active {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
600 background: white;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
601 font-weight: bold;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
602 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
603 .help-btn {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
604 margin-left: auto;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
605 padding: 6px 12px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
606 font-size: 0.9rem;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
607 border: 1px solid #4CAF50;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
608 border-radius: 4px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
609 background: #4CAF50;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
610 color: white;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
611 cursor: pointer;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
612 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
613 .tab-content {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
614 display: none;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
615 padding: 20px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
616 border: 1px solid #ccc;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
617 border-top: none;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
618 background: #fff;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
619 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
620 .tab-content.active {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
621 display: block;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
622 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
623
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
624 /* Modal (used by get_metrics_help_modal) */
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
625 .modal {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
626 display: none;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
627 position: fixed;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
628 z-index: 9999;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
629 left: 0; top: 0;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
630 width: 100%; height: 100%;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
631 overflow: auto;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
632 background-color: rgba(0,0,0,0.4);
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
633 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
634 .modal-content {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
635 background-color: #fefefe;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
636 margin: 8% auto;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
637 padding: 20px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
638 border: 1px solid #888;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
639 width: 90%;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
640 max-width: 900px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
641 border-radius: 8px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
642 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
643 .modal .close {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
644 color: #777;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
645 float: right;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
646 font-size: 28px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
647 font-weight: bold;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
648 line-height: 1;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
649 margin-left: 8px;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
650 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
651 .modal .close:hover,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
652 .modal .close:focus {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
653 color: black;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
654 text-decoration: none;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
655 cursor: pointer;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
656 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
657 .metrics-guide h3 { margin-top: 20px; }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
658 .metrics-guide p { margin: 6px 0; }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
659 .metrics-guide ul { margin: 10px 0; padding-left: 20px; }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
660 </style>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
661
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
662 <script>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
663 // Guard to avoid double-initialization if this block is included twice
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
664 (function(){
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
665 if (window.__perfSummarySortInit) return;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
666 window.__perfSummarySortInit = true;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
667
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
668 function initPerfSummarySorting() {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
669 // Record original order for "back to original"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
670 document.querySelectorAll('table.performance-summary tbody').forEach(tbody => {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
671 Array.from(tbody.rows).forEach((row, i) => { row.dataset.originalOrder = i; });
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
672 });
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
673
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
674 const getText = td => (td?.innerText || '').trim();
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
675 const cmp = (idx, asc) => (a, b) => {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
676 const v1 = getText(a.children[idx]);
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
677 const v2 = getText(b.children[idx]);
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
678 const n1 = parseFloat(v1), n2 = parseFloat(v2);
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
679 if (!isNaN(n1) && !isNaN(n2)) return asc ? n1 - n2 : n2 - n1; // numeric
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
680 return asc ? v1.localeCompare(v2) : v2.localeCompare(v1); // lexical
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
681 };
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
682
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
683 document.querySelectorAll('table.performance-summary th.sortable').forEach(th => {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
684 // initialize to “none”
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
685 th.classList.remove('sorted-asc','sorted-desc');
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
686 th.classList.add('sorted-none');
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
687
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
688 th.addEventListener('click', () => {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
689 const table = th.closest('table');
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
690 const headerRow = th.parentNode;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
691 const allTh = headerRow.querySelectorAll('th.sortable');
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
692 const tbody = table.querySelector('tbody');
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
693
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
694 // Determine current state BEFORE clearing
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
695 const isAsc = th.classList.contains('sorted-asc');
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
696 const isDesc = th.classList.contains('sorted-desc');
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
697
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
698 // Reset all headers in this row
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
699 allTh.forEach(x => x.classList.remove('sorted-asc','sorted-desc','sorted-none'));
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
700
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
701 // Compute next state
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
702 let next;
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
703 if (!isAsc && !isDesc) {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
704 next = 'asc';
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
705 } else if (isAsc) {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
706 next = 'desc';
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
707 } else {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
708 next = 'none';
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
709 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
710 th.classList.add('sorted-' + next);
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
711
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
712 // Sort rows according to the chosen state
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
713 const rows = Array.from(tbody.rows);
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
714 if (next === 'none') {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
715 rows.sort((a, b) => (a.dataset.originalOrder - b.dataset.originalOrder));
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
716 } else {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
717 const idx = Array.from(headerRow.children).indexOf(th);
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
718 rows.sort(cmp(idx, next === 'asc'));
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
719 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
720 rows.forEach(r => tbody.appendChild(r));
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
721 });
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
722 });
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
723 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
724
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
725 // Run after DOM is ready
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
726 if (document.readyState === 'loading') {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
727 document.addEventListener('DOMContentLoaded', initPerfSummarySorting);
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
728 } else {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
729 initPerfSummarySorting();
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
730 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
731 })();
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
732 </script>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
733 </head>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
734 <body>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
735 <div class="container">
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
736 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
737
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
738
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
739 def get_html_closing():
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
740 """Closes .container, body, and html."""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
741 return """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
742 </div>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
743 </body>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
744 </html>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
745 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
746
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
747
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
748 def build_tabbed_html(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
749 summary_html: str,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
750 train_html: str,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
751 test_html: str,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
752 feature_html: str,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
753 explainer_html: Optional[str] = None,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
754 ) -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
755 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
756 Renders the tab headers, contents, and JS to switch tabs.
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
757 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
758 tabs = [
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
759 '<div class="tabs">',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
760 '<div class="tab active" onclick="showTab(\'summary\')">Model Metric Summary and Config</div>',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
761 '<div class="tab" onclick="showTab(\'train\')">Train and Validation Summary</div>',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
762 '<div class="tab" onclick="showTab(\'test\')">Test Summary</div>',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
763 ]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
764 if explainer_html:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
765 tabs.append('<div class="tab" onclick="showTab(\'explainer\')">Explainer Plots</div>')
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
766 tabs.append('<button id="openMetricsHelp" class="help-btn">Help</button>')
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
767 tabs.append('</div>')
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
768 tabs_section = "\n".join(tabs)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
769
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
770 contents = [
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
771 f'<div id="summary" class="tab-content active">{summary_html}</div>',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
772 f'<div id="train" class="tab-content">{train_html}</div>',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
773 f'<div id="test" class="tab-content">{test_html}</div>',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
774 ]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
775 if explainer_html:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
776 contents.append(f'<div id="explainer" class="tab-content">{explainer_html}</div>')
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
777 content_section = "\n".join(contents)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
778
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
779 js = """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
780 <script>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
781 function showTab(id) {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
782 document.querySelectorAll('.tab-content').forEach(el => el.classList.remove('active'));
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
783 document.querySelectorAll('.tab').forEach(el => el.classList.remove('active'));
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
784 document.getElementById(id).classList.add('active');
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
785 document.querySelector(`.tab[onclick*="${id}"]`).classList.add('active');
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
786 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
787 </script>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
788 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
789 return tabs_section + "\n" + content_section + "\n" + js
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
790
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
791
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
792 def encode_image_to_base64(image_path: str) -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
793 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
794 Reads an image file from disk and returns a base64-encoded string
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
795 for embedding directly in HTML <img> tags.
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
796 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
797 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
798 with open(image_path, "rb") as img_f:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
799 return base64.b64encode(img_f.read()).decode("utf-8")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
800 except Exception as e:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
801 logger.error(f"Failed to encode image '{image_path}': {e}")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
802 return ""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
803
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
804
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
805 def get_model_architecture(predictor: Any) -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
806 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
807 Returns a human-friendly description of the final model architecture based on the
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
808 MultiModalPredictor configuration (e.g., timm_image=resnet50, hf_text=bert-base-uncased).
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
809 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
810 # MultiModalPredictor path: read backbones from config if available
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
811 archs = []
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
812 for attr in ("_config", "config"):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
813 cfg = getattr(predictor, attr, None)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
814 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
815 model_cfg = getattr(cfg, "model", None)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
816 if model_cfg:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
817 # OmegaConf-like mapping
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
818 for name, sub in dict(model_cfg).items():
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
819 ck = None
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
820 # sub may be an object or a dict-like node
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
821 for k in ("checkpoint_name", "name", "model_name"):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
822 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
823 ck = getattr(sub, k)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
824 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
825 ck = sub.get(k) if isinstance(sub, dict) else ck
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
826 if ck:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
827 break
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
828 if ck:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
829 archs.append(f"{name}={ck}")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
830 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
831 continue
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
832
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
833 if archs:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
834 return ", ".join(archs)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
835
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
836 # Fallback
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
837 return type(predictor).__name__
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
838
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
839
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
840 def collect_run_context(args, predictor, problem_type: str,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
841 df_train: pd.DataFrame, df_val: pd.DataFrame, df_test: pd.DataFrame,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
842 warnings_list: List[str],
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
843 notes_list: List[str]) -> Dict[str, Any]:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
844 """Build a dictionary with run/system context for transparency."""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
845 # System info (best-effort; not depending on AutoGluon stdout)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
846 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
847 import psutil # optional
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
848 mem = psutil.virtual_memory()
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
849 mem_total_gb = mem.total / (1024 ** 3)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
850 mem_avail_gb = mem.available / (1024 ** 3)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
851 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
852 mem_total_gb = mem_avail_gb = None
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
853
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
854 ctx = {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
855 "timestamp": datetime.now().isoformat(timespec="seconds"),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
856 "python_version": platform.python_version(),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
857 "platform": {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
858 "system": platform.system(),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
859 "release": platform.release(),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
860 "version": platform.version(),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
861 "machine": platform.machine(),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
862 },
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
863 "cpu_count": os.cpu_count(),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
864 "memory_total_gb": mem_total_gb,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
865 "memory_available_gb": mem_avail_gb,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
866 "packages": {},
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
867 "problem_type": problem_type,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
868 "label_column": args.label_column,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
869 "time_limit_sec": args.time_limit,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
870 "random_seed": args.random_seed,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
871 "splits": {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
872 "train_rows": int(len(df_train)),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
873 "val_rows": int(len(df_val)),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
874 "test_rows": int(len(df_test)),
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
875 "n_features_raw": int(len(df_train.columns) - 1), # minus label
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
876 },
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
877 "warnings": warnings_list,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
878 "notes": notes_list,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
879 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
880 # Package versions (safe best-effort)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
881 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
882 import autogluon
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
883 ctx["packages"]["autogluon"] = getattr(autogluon, "__version__", "unknown")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
884 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
885 pass
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
886 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
887 import torch as _torch
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
888 ctx["packages"]["torch"] = getattr(_torch, "__version__", "unknown")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
889 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
890 pass
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
891 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
892 import sklearn
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
893 ctx["packages"]["scikit_learn"] = getattr(sklearn, "__version__", "unknown")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
894 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
895 pass
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
896 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
897 import numpy as _np
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
898 ctx["packages"]["numpy"] = getattr(_np, "__version__", "unknown")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
899 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
900 pass
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
901 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
902 import pandas as _pd
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
903 ctx["packages"]["pandas"] = getattr(_pd, "__version__", "unknown")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
904 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
905 pass
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
906 return ctx
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
907
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
908
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
909 def build_class_balance_html(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
910 df_train: Optional[pd.DataFrame],
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
911 label_col: str,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
912 df_val: Optional[pd.DataFrame] = None,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
913 df_test: Optional[pd.DataFrame] = None,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
914 ) -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
915 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
916 Render label counts for each available split (Train/Validation/Test).
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
917 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
918 def _count_labels(frame: Optional[pd.DataFrame]) -> pd.Series:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
919 if frame is None or label_col not in frame:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
920 return pd.Series(dtype=int)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
921 series = frame[label_col]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
922 if series.dtype.kind in "ifu":
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
923 return pd.Series(series).value_counts(dropna=False).sort_index()
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
924 return pd.Series(series.astype(str)).value_counts(dropna=False)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
925
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
926 counts_train = _count_labels(df_train)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
927 counts_val = _count_labels(df_val)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
928 counts_test = _count_labels(df_test)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
929
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
930 labels: list[Any] = []
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
931 for idx in (counts_train.index, counts_val.index, counts_test.index):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
932 for label in idx:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
933 if label not in labels:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
934 labels.append(label)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
935
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
936 has_train = df_train is not None
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
937 has_val = df_val is not None
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
938 has_test = df_test is not None
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
939
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
940 def _fmt_count(counts: pd.Series, label: Any, enabled: bool) -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
941 if not enabled:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
942 return "—"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
943 return str(int(counts.get(label, 0)))
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
944
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
945 rows = [
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
946 f"<tr><td>{_escape(label)}</td>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
947 f"<td>{_fmt_count(counts_train, label, has_train)}</td>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
948 f"<td>{_fmt_count(counts_val, label, has_val)}</td>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
949 f"<td>{_fmt_count(counts_test, label, has_test)}</td></tr>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
950 for label in labels
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
951 ]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
952
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
953 if not rows:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
954 return "<p>No label distribution available.</p>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
955
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
956 return f"""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
957 <h3>Label Counts by Split</h3>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
958 <table class="table">
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
959 <thead><tr><th>Label</th><th>Train</th><th>Validation</th><th>Test</th></tr></thead>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
960 <tbody>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
961 {''.join(rows)}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
962 </tbody>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
963 </table>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
964 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
965
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
966
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
967 def build_leaderboard_html(predictor) -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
968 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
969 lb = predictor.leaderboard(silent=True)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
970 # keep common helpful columns if present
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
971 cols_pref = ["model", "score_val", "eval_metric", "pred_time_val", "fit_time",
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
972 "pred_time_val_marginal", "fit_time_marginal", "stack_level", "can_infer", "fit_order"]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
973 cols = [c for c in cols_pref if c in lb.columns] or list(lb.columns)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
974 return "<h3>Model Leaderboard (Validation)</h3>" + lb[cols].to_html(index=False)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
975 except Exception as e:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
976 return f"<h3>Model Leaderboard</h3><p>Unavailable: {_escape(e)}</p>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
977
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
978
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
979 def build_ignored_features_html(predictor, df_any: pd.DataFrame) -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
980 # MultiModalPredictor does not always expose .features(); guard accordingly.
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
981 used = set()
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
982 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
983 used = set(predictor.features())
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
984 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
985 # If we can't determine, don't emit a misleading section
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
986 return ""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
987 raw_cols = [c for c in df_any.columns if c != getattr(predictor, "label", None)]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
988 ignored = [c for c in raw_cols if c not in used]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
989 if not ignored:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
990 return ""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
991 items = "".join(f"<li>{html.escape(c)}</li>" for c in ignored)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
992 return f"""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
993 <h3>Ignored / Unused Features</h3>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
994 <p>The following columns were not used by the trained predictor at inference time:</p>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
995 <ul>{items}</ul>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
996 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
997
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
998
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
999 def build_presets_hparams_html(predictor, replacements: Optional[dict] = None) -> str:
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1000 # MultiModalPredictor path
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1001 mm_hp = {}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1002 for attr in ("_config", "config", "_fit_args"):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1003 if hasattr(predictor, attr):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1004 try:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1005 val = getattr(predictor, attr)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1006 # make it JSON-ish
8
a48e750cfd25 planemo upload for repository https://github.com/goeckslab/gleam.git commit c8a7fef0c54c269afd6c6bdf035af1a7574d11cb
goeckslab
parents: 0
diff changeset
1007 mm_hp[attr] = _replace_local_backbone_strings(str(val), replacements)
0
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1008 except Exception:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1009 continue
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1010 hp_html = f"<pre>{html.escape(json.dumps(mm_hp, indent=2))}</pre>" if mm_hp else "<i>Unavailable</i>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1011 return f"<h3>Training Presets & Hyperparameters</h3><details open><summary>Show hyperparameters</summary>{hp_html}</details>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1012
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1013
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1014 def build_warnings_html(warnings_list: List[str], notes_list: List[str]) -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1015 if not warnings_list and not notes_list:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1016 return ""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1017 w_html = "".join(f"<li>{_escape(w)}</li>" for w in warnings_list)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1018 n_html = "".join(f"<li>{_escape(n)}</li>" for n in notes_list)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1019 return f"""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1020 <h3>Warnings & Notices</h3>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1021 {'<h4>Warnings</h4><ul>'+w_html+'</ul>' if warnings_list else ''}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1022 {'<h4>Notices</h4><ul>'+n_html+'</ul>' if notes_list else ''}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1023 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1024
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1025
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1026 def build_reproducibility_html(args, ctx: Dict[str, Any], model_path: Optional[str]) -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1027 cmd = " ".join(_escape(x) for x in sys.argv)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1028 load_snippet = ""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1029 if model_path:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1030 load_snippet = f"""<pre>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1031 from autogluon.multimodal import MultiModalPredictor
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1032 predictor = MultiModalPredictor.load("{_escape(model_path)}")
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1033 </pre>"""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1034 pkg_rows = "".join(f"<tr><td>{_escape(k)}</td><td>{_escape(v)}</td></tr>" for k, v in (ctx.get("packages") or {}).items())
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1035 sys_table = f"""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1036 <table class="table">
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1037 <tbody>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1038 <tr><th>Timestamp</th><td>{_escape(ctx.get('timestamp'))}</td></tr>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1039 <tr><th>Python</th><td>{_escape(ctx.get('python_version'))}</td></tr>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1040 <tr><th>Platform</th><td>{_escape(ctx.get('platform'))}</td></tr>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1041 <tr><th>CPU Count</th><td>{_escape(ctx.get('cpu_count'))}</td></tr>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1042 <tr><th>Memory (GB)</th><td>Total: {_escape(ctx.get('memory_total_gb'))} | Avail: {_escape(ctx.get('memory_available_gb'))}</td></tr>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1043 <tr><th>Seed</th><td>{_escape(ctx.get('random_seed'))}</td></tr>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1044 <tr><th>Time Limit (s)</th><td>{_escape(ctx.get('time_limit_sec'))}</td></tr>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1045 </tbody>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1046 </table>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1047 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1048 pkgs_table = f"""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1049 <h4>Package Versions</h4>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1050 <table class="table">
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1051 <thead><tr><th>Package</th><th>Version</th></tr></thead>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1052 <tbody>{pkg_rows}</tbody>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1053 </table>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1054 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1055 return f"""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1056 <h3>Reproducibility</h3>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1057 <h4>Command</h4>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1058 <pre>{cmd}</pre>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1059 {sys_table}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1060 {pkgs_table}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1061 <h4>Load Trained Model</h4>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1062 {load_snippet or '<i>Model path not available</i>'}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1063 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1064
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1065
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1066 def build_modalities_html(predictor, df_any: pd.DataFrame, label_col: str, image_col: Optional[str]) -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1067 """Summarize which inputs/modalities are used for MultiModalPredictor."""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1068 cols = [c for c in df_any.columns]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1069 # exclude label from feature list
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1070 feat_cols = [c for c in cols if c != label_col]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1071 # identify image vs tabular columns from args / presence
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1072 img_present = (image_col in df_any.columns) if image_col else False
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1073 tab_cols = [c for c in feat_cols if c != image_col]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1074
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1075 # brief lists (avoid dumping all, unless small)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1076 def list_or_count(arr, max_show=20):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1077 if len(arr) <= max_show:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1078 items = "".join(f"<li>{html.escape(str(x))}</li>" for x in arr)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1079 return f"<ul>{items}</ul>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1080 return f"<p>{len(arr)} columns</p>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1081
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1082 img_block = f"<p><b>Image column:</b> {html.escape(image_col)}</p>" if img_present else "<p><b>Image column:</b> None</p>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1083 tab_block = f"<div><b>Structured columns:</b> {len(tab_cols)}{list_or_count(tab_cols, max_show=15)}</div>"
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1084
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1085 return f"""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1086 <h3>Modalities & Inputs</h3>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1087 <p>This run used <b>MultiModalPredictor</b> (images + structured features).</p>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1088 <p><b>Label column:</b> {html.escape(label_col)}</p>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1089 {img_block}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1090 {tab_block}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1091 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1092
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1093
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1094 def build_model_performance_summary_table(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1095 train_scores: dict,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1096 val_scores: dict,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1097 test_scores: dict | None = None,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1098 include_test: bool = True,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1099 title: str | None = 'Model Performance Summary',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1100 show_title: bool = True,
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1101 ) -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1102 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1103 Returns an HTML table for metrics, optionally hiding the Test column.
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1104 Keys across score dicts are unioned; missing values render as '—'.
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1105 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1106 def fmt(v):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1107 if v is None:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1108 return '—'
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1109 if isinstance(v, (int, float)):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1110 return f'{v:.4f}'
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1111 return str(v)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1112
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1113 # Collect union of metric keys across splits
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1114 metrics = set(train_scores.keys()) | set(val_scores.keys()) | (set(test_scores.keys()) if (include_test and test_scores) else set())
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1115
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1116 # Remove AG_roc_auc entirely as requested
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1117 metrics.discard('AG_roc_auc')
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1118
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1119 # Helper: normalize metric keys for matching preferred names
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1120 def _norm(k: str) -> str:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1121 return ''.join(ch for ch in str(k).lower() if ch.isalnum())
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1122
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1123 # Preferred metrics to appear at the end in this specific order (display names):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1124 preferred_display = ['Accuracy', 'ROC-AUC', 'Precision', 'Recall', 'F1-Score', 'PR-AUC', 'Specificity', 'MCC', 'LogLoss']
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1125 # Mapping of normalized key -> display label
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1126 norm_to_display = {
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1127 'accuracy': 'Accuracy',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1128 'acc': 'Accuracy',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1129 'rocauc': 'ROC-AUC',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1130 'roc_auc': 'ROC-AUC',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1131 'rocaucscore': 'ROC-AUC',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1132 'precision': 'Precision',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1133 'prec': 'Precision',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1134 'recall': 'Recall',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1135 'recallsensitivitytpr': 'Recall',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1136 'f1': 'F1-Score',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1137 'f1score': 'F1-Score',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1138 'pr_auc': 'PR-AUC',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1139 'prauc': 'PR-AUC',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1140 'averageprecision': 'PR-AUC',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1141 'specificity': 'Specificity',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1142 'tnr': 'Specificity',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1143 'mcc': 'MCC',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1144 'logloss': 'LogLoss',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1145 'crossentropy': 'LogLoss',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1146 }
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1147
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1148 # Build ordered list: all non-preferred metrics sorted alphabetically, then preferred metrics in the requested order if present
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1149 preferred_norms = [_norm(x) for x in preferred_display]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1150 all_metrics = list(metrics)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1151 # Partition
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1152 preferred_present = []
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1153 others = []
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1154 for m in sorted(all_metrics):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1155 nm = _norm(m)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1156 if nm in preferred_norms or any(
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1157 p in nm for p in ["rocauc", "prauc", "f1", "mcc", "logloss", "accuracy", "precision", "recall", "specificity"]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1158 ):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1159 # Defer preferred-like metrics to the end (we will place them in canonical order)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1160 preferred_present.append(m)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1161 else:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1162 others.append(m)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1163
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1164 # Now assemble final metric order: others (alpha), then preferred in exact requested order if they exist in metrics
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1165 final_metrics = []
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1166 final_metrics.extend(others)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1167 for disp in preferred_display:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1168 # find any original key matching this display (by normalized mapping)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1169 target_norm = _norm(disp)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1170 found = None
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1171 for m in preferred_present:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1172 if _norm(m) == target_norm or norm_to_display.get(_norm(m)) == disp or _norm(m).replace(' ', '') == target_norm:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1173 found = m
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1174 break
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1175 # also allow substring matches (e.g., 'roc_auc' vs 'rocauc')
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1176 if target_norm in _norm(m):
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1177 found = m
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1178 break
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1179 if found:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1180 final_metrics.append(found)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1181
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1182 metrics = final_metrics
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1183
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1184 # Make all headers sortable by adding the 'sortable' class; the JS in utils.py hooks table.performance-summary
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1185 header_cells = [
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1186 '<th class="sortable">Metric</th>',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1187 '<th class="sortable">Train</th>',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1188 '<th class="sortable">Validation</th>'
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1189 ]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1190 if include_test and test_scores:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1191 header_cells.append('<th class="sortable">Test</th>')
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1192
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1193 rows_html = []
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1194 for m in metrics:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1195 # Display label mapping: clean up common verbose names
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1196 disp = m
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1197 nm = _norm(m)
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1198 if nm in norm_to_display:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1199 disp = norm_to_display[nm]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1200 else:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1201 # generic cleanup: replace underscores with space and remove parenthetical qualifiers
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1202 disp = str(m).replace('_', ' ')
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1203 disp = disp.replace('(Sensitivity/TPR)', '')
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1204 disp = disp.replace('(TNR)', '')
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1205 disp = disp.strip()
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1206
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1207 cells = [
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1208 f'<td>{_escape(disp)}</td>',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1209 f'<td>{fmt(train_scores.get(m))}</td>',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1210 f'<td>{fmt(val_scores.get(m))}</td>',
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1211 ]
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1212 if include_test and test_scores:
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1213 cells.append(f'<td>{fmt(test_scores.get(m))}</td>')
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1214
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1215 rows_html.append('<tr>' + ''.join(cells) + '</tr>')
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1216
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1217 title_html = f'<h3 style="margin-top:0">{title}</h3>' if (show_title and title) else ''
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1218
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1219 table_html = f"""
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1220 {title_html}
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1221 <table class="performance-summary">
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1222 <thead><tr>{''.join(header_cells)}</tr></thead>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1223 <tbody>{''.join(rows_html)}</tbody>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1224 </table>
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1225 """
375c36923da1 planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0
goeckslab
parents:
diff changeset
1226 return table_html