Mercurial > repos > greg > plant_tribes_gene_family_aligner

changeset 8:32587f12102c draft

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Uploaded
author greg
date Fri, 22 Jun 2018 08:40:34 -0400
parents 2ac7090847f9
children 3a68400b692b
files gene_family_aligner.xml
diffstat 1 files changed, 3 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_aligner.xml	Thu Dec 21 09:14:22 2017 -0500
+++ b/gene_family_aligner.xml	Fri Jun 22 08:40:34 2018 -0400
@@ -15,6 +15,9 @@
     #set name = $i.name
     ln -s $filename $input_dir/$name &&
 #end for
+export TOOLS_DIR=\$(dirname `which GeneFamilyAligner`) &&
+export PASTA_TOOLS_RUNDIR=\$TOOLS_DIR &&
+export PASTA_TOOLS_DEVDIR=\$TOOLS_DIR &&
 GeneFamilyAligner
 --alignment_method $alignment_method
 #if str($alignment_method) == 'pasta':