diff test-data/test5.tab @ 0:5367786dc871 draft default tip

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author greg
date Tue, 14 Mar 2023 15:21:14 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test5.tab	Tue Mar 14 15:21:14 2023 +0000
@@ -0,0 +1,58 @@
+Assembly	contig1	contig2
+# contigs (>= 0 bp)	3	1
+# contigs (>= 1000 bp)	3	1
+Total length (>= 0 bp)	6710	6650
+Total length (>= 1000 bp)	6710	6650
+# contigs	3	1
+Largest contig	3980	6650
+Total length	6710	6650
+Reference length	6650	6650
+GC (%)	51.28	52.00
+Reference GC (%)	52.00	52.00
+N50	3980	6650
+NG50	3980	6650
+N90	1120	6650
+NG90	1120	6650
+auN	2934.0	6650.0
+auNG	2960.4	6650.0
+L50	1	1
+LG50	1	1
+L90	3	1
+LG90	3	1
+# total reads	330	330
+# left	0	0
+# right	0	0
+Mapped (%)	2.73	2.42
+Reference mapped (%)	2.42	2.42
+Properly paired (%)	0.0	0.0
+Reference properly paired (%)	0.0	0.0
+Avg. coverage depth	0	1
+Reference avg. coverage depth	1	1
+Coverage >= 1x (%)	42.22	48.17
+Reference coverage >= 1x (%)	48.17	48.17
+# misassemblies	0	0
+# misassembled contigs	0	0
+Misassembled contigs length	0	0
+# local misassemblies	0	0
+# scaffold gap ext. mis.	0	0
+# scaffold gap loc. mis.	0	0
+# unaligned mis. contigs	0	0
+# unaligned contigs	0 + 1 part	0 + 0 part
+Unaligned length	1950	0
+Genome fraction (%)	71.579	100.000
+Duplication ratio	1.000	1.000
+# N's per 100 kbp	0.00	0.00
+# mismatches per 100 kbp	0.00	0.00
+# indels per 100 kbp	0.00	0.00
+Largest alignment	2030	6650
+Total aligned length	4760	6650
+NA50	1610	6650
+NGA50	1610	6650
+NA90	-	6650
+NGA90	-	6650
+auNA	1187.4	6650.0
+auNGA	1198.1	6650.0
+LA50	2	1
+LGA50	2	1
+LA90	-	1
+LGA90	-	1